RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 IGKV2D-26A0A0A0MRZ7 120 aa8.46□□□□□ -1.06
CLIP1-208ENST00000537004 PRSS29PA6NIE9 313 aa8.46□□□□□ -1.06
CLIP1-208ENST00000537004 SCGB1A1P11684 91 aa8.46□□□□□ -1.06
CLIP1-208ENST00000537004 NANOS2P60321 138 aaKnown RBP8.46□□□□□ -1.06
CLIP1-208ENST00000537004 PCP2Q8IVA1 136 aa8.46□□□□□ -1.06
CLIP1-208ENST00000537004 LCE6AA0A183 80 aa8.45□□□□□ -1.06
CLIP1-208ENST00000537004 PLAC8L1A1L4L8 177 aa8.45□□□□□ -1.06
CLIP1-208ENST00000537004 DAZ2Q13117 558 aaKnown RBP8.45□□□□□ -1.06
CLIP1-208ENST00000537004 Q8NAQ8 132 aa8.45□□□□□ -1.06
CLIP1-208ENST00000537004 C20orf203Q8NBC4 194 aa8.45□□□□□ -1.06
CLIP1-208ENST00000537004 NOP10Q9NPE3 64 aaKnown RBP8.45□□□□□ -1.06
CLIP1-208ENST00000537004 X6R8D5 127 aa8.45□□□□□ -1.06
CLIP1-208ENST00000537004 IGHV4-28A0A0C4DH34 117 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 SIVA1O15304 175 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 RRN3P1Q2M238 152 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 DNAJC30Q96LL9 226 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 KMT2AQ03164 3969 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 PMVKQ15126 192 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 ZNF479Q96JC4 524 aa8.44□□□□□ -1.06
CLIP1-208ENST00000537004 TRAV4A0A0B4J268 109 aa8.43□□□□□ -1.06
CLIP1-208ENST00000537004 C11orf68Q9H3H3 251 aaKnown RBP8.43□□□□□ -1.06
CLIP1-208ENST00000537004 HSD52Q0P140 79 aa8.42□□□□□ -1.06
CLIP1-208ENST00000537004 C11orf45Q8TAV5 145 aa8.42□□□□□ -1.06
CLIP1-208ENST00000537004 PHLDA1Q8WV24 401 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-208ENST00000537004 DNAH1Q9P2D7 4330 aa8.42□□□□□ -1.06
CLIP1-208ENST00000537004 H3BUT2 72 aa8.42□□□□□ -1.06
CLIP1-208ENST00000537004 CEMP1Q6PRD7 247 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-208ENST00000537004 OPRPNQ99935 248 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-208ENST00000537004 TTTY13Q9BZ97 58 aa8.42□□□□□ -1.06
CLIP1-208ENST00000537004 IGLV4-69A0A075B6H9 119 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 A0A1W2PPM0 123 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 K7EQD1 137 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 GAGE7O76087 117 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 GAGE12FP0CL80 117 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 GAGE12GP0CL81 117 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 GAGE12IP0CL82 117 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 MIFP14174 115 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 CELA1Q9UNI1 258 aa8.41□□□□□ -1.06
CLIP1-208ENST00000537004 TRBV7-3A0A075B6L6 115 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 TRGV2A0A075B6R0 118 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 IGHV3-38A0A0C4DH36 116 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 C11orf86A6NJI1 115 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 EMP1P54849 157 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 PAPPA-AS1Q5QFB9 102 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 ZNRF2Q8NHG8 242 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 CHCHD7Q9BUK0 85 aa8.4□□□□□ -1.06
CLIP1-208ENST00000537004 IGLV4-3A0A075B6K6 122 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 TRBV10-1A0A0K0K1A3 114 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 NUPR2A6NF83 97 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 SLC25A29Q8N8R3 303 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 PYGO1Q9Y3Y4 419 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 SPCS1Q9Y6A9 102 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 ALMS1Q8TCU4 4167 aa8.39□□□□□ -1.07
CLIP1-208ENST00000537004 FABP2P12104 132 aa8.38□□□□□ -1.07
CLIP1-208ENST00000537004 RPL36AP83881 106 aaKnown RBP8.38□□□□□ -1.07
CLIP1-208ENST00000537004 Q6ZTC4 211 aa8.38□□□□□ -1.07
CLIP1-208ENST00000537004 RPL36ALQ969Q0 106 aaKnown RBP8.38□□□□□ -1.07
CLIP1-208ENST00000537004 VCX2Q9H322 139 aa8.38□□□□□ -1.07
CLIP1-208ENST00000537004 TRBV25-1A0A075B6N4 114 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 MAPKAPK5-AS1Q8N8E1 139 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 FAM104AQ969W3 186 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 SIGMAR1Q99720 223 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 EPPK1P58107 5090 aaKnown RBP8.37□□□□□ -1.07
CLIP1-208ENST00000537004 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-208ENST00000537004 A0A1B0GV72 72 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 IGKV2-29A2NJV5 120 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-208ENST00000537004 E9PLD3 99 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 LY6G6CO95867 125 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 LINC00476Q8WZB0 136 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 HIGD1BQ9P298 99 aa8.37□□□□□ -1.07
CLIP1-208ENST00000537004 C12orf74Q32Q52 190 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 NFE4Q86UQ8 179 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 PRADC1Q9BSG0 188 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 CHAC1Q9BUX1 264 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 SPANXA1Q9NS26 97 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 UBE2D4Q9Y2X8 147 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 KLK5Q9Y337 293 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-208ENST00000537004 TRGV4A0A0C4DH28 118 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 GAGE12JA6NER3 117 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 SMIM9A6NGZ8 99 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 SMIM13P0DJ93 91 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 CRYBA4P53673 196 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 UBE2D3P61077 147 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 UBE2D2P62837 147 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 GAGE4Q13068 117 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 GAGE5Q13069 117 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 GAGE13Q4V321 117 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 TMEM170BQ5T4T1 132 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 DAZ4Q86SG3 579 aaKnown RBP8.36□□□□□ -1.07
CLIP1-208ENST00000537004 AMELXQ99217 191 aa8.36□□□□□ -1.07
CLIP1-208ENST00000537004 DAZ3Q9NR90 486 aaKnown RBP8.36□□□□□ -1.07
CLIP1-208ENST00000537004 FRAS1Q86XX4 4008 aa8.35□□□□□ -1.07
CLIP1-208ENST00000537004 HERVK_113P61574 105 aa8.35□□□□□ -1.07
CLIP1-208ENST00000537004 MYMXA0A1B0GTQ4 84 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 TRBV6-4A0A1B0GX49 114 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 IGLL5B9A064 214 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 J3QR89 54 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 RAB37Q96AX2 223 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 A0A0J9YXV3 536 aa8.34□□□□□ -1.07
CLIP1-208ENST00000537004 DEFB130BP0DP73 79 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms