RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 IGLV7-46A0A075B6I9 117 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 IGHV1-24A0A0C4DH33 117 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 TRBV6-1A0A0K0K1D8 114 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 C20orf202A1L168 122 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 ARMS2P0C7Q2 107 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 PVALBP20472 110 aaPredicted RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 FAUP35544 74 aaKnown RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 TMBIM6P55061 237 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 RPL32P62910 135 aaKnown RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 ZNF56Q15929 161 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 C9orf116Q5BN46 136 aaPredicted RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 FAM162BQ5T6X4 162 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 TEX261Q6UWH6 196 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 SLC25A21Q9BQT8 299 aaPredicted RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 SNHG12Q9BXW3 62 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 CSDC2Q9Y534 153 aaKnown RBP3.77□□□□□ -1.81
CD44-237ENST00000534082 HSPB11Q9Y547 144 aa3.77□□□□□ -1.81
CD44-237ENST00000534082 A0A087WZ39 114 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 IGSF23A1L1A6 192 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 FAM74A7A6NL05 159 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 C1orf196B1AJZ1 125 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 B4DEV8 164 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 K7ERU9 68 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 PAGE4O60829 102 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 UPK1BO75841 260 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 CAMPP49913 170 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 SULT1A1P50225 295 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 HBG1P69891 147 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 HBG2P69892 147 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 MT1HP80294 61 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 FAM74A3Q4VXF1 159 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 KHDC3LQ587J8 217 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 THAP6Q8TBB0 222 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 ORAOV1Q8WV07 137 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 LINC00526Q96FQ7 95 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 AQP10Q96PS8 301 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 CCDC32Q9BV29 185 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 FUNDC2Q9BWH2 189 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 NKX6-2Q9C056 277 aaPredicted RBP3.76□□□□□ -1.81
CD44-237ENST00000534082 RPP21Q9H633 154 aaKnown RBP3.76□□□□□ -1.81
CD44-237ENST00000534082 KCNIP2Q9NS61 270 aa3.76□□□□□ -1.81
CD44-237ENST00000534082 LSM5Q9Y4Y9 91 aaKnown RBP3.76□□□□□ -1.81
CD44-237ENST00000534082 A0A087WXM4 84 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 IGKV3OR2-268A0A0C4DH90 116 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 LOC107984640A0A0U1RRK4 108 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 A0A1B0GUV1 79 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 GRIFINA4D1Z8 144 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 SSNA1O43805 119 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 CKS1BP61024 79 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 FABP9Q0Z7S8 132 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 ASB16-AS1Q495Z4 193 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 OCIAD2Q56VL3 154 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 C6orf226Q5I0X4 101 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 PYY3Q5JQD4 70 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 PRNTQ86SH4 94 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 LINC01551Q86U37 167 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 KRTAP11-1Q8IUC1 163 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 OR5C1Q8NGR4 320 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 CHCHD10Q8WYQ3 142 aaPredicted RBP3.75□□□□□ -1.81
CD44-237ENST00000534082 C11orf1Q9H5F2 150 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 PSG8Q9UQ74 426 aa3.75□□□□□ -1.81
CD44-237ENST00000534082 F5H697 171 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 PPP1R2P9O14990 202 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 TCRAP04437 139 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 BCL2P10415 239 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 TPT1P13693 172 aaKnown RBP3.74□□□□□ -1.81
CD44-237ENST00000534082 TAS2R45P59539 299 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 DEFA1P59665 94 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 DEFA3P59666 94 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 KRTAP10-6P60371 365 aaPredicted RBP3.74□□□□□ -1.81
CD44-237ENST00000534082 SYCNQ0VAF6 134 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 UBE2V1Q13404 147 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 TMEM243Q9BU79 118 aa3.74□□□□□ -1.81
CD44-237ENST00000534082 A0A087X002 238 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 TGIF2-C20orf24A0A0A6YYL0 155 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 FABP5P3A8MUU1 101 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 CCL25O15444 150 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 PDE6DO43924 150 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 FGF6P10767 208 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 S100A2P29034 98 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 PDZD11Q5EBL8 140 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 LINC00173Q6ZV60 143 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 SMIM20Q8N5G0 67 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 TMEM252Q8N6L7 170 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 C5orf17Q8NAS9 161 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 TYMSOSQ8TAI1 123 aa3.73□□□□□ -1.81
CD44-237ENST00000534082 NAA50Q9GZZ1 169 aaKnown RBP3.73□□□□□ -1.81
CD44-237ENST00000534082 IGHV1-58A0A0C4DH39 117 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 UBE2L6O14933 153 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 PMCHP20382 165 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 RPL18AQ02543 176 aaKnown RBP3.72□□□□□ -1.81
CD44-237ENST00000534082 TOMM5Q8N4H5 51 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 TSKUQ8WUA8 353 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 MRAP2Q96G30 205 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 PPDPFQ9H3Y8 114 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 CST9LQ9H4G1 147 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 SS18L2Q9UHA2 77 aa3.72□□□□□ -1.81
CD44-237ENST00000534082 TMSB15BA0A087X1C1 80 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 C17orf112F2Z3M2 114 aa3.71□□□□□ -1.82
CD44-237ENST00000534082 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms