RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RHOHQ15669 191 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 C1orf195Q5TG92 126 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 KRTAP26-1Q6PEX3 210 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 OR8I2Q8N0Y5 310 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 C20orf166-AS1Q96NR2 134 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 GINS4Q9BRT9 223 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 FKBP11Q9NYL4 201 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 AK3Q9UIJ7 227 aa1.67□□□□□ -2.14
CD44-235ENST00000532339 TRBV6-4A0A1B0GX49 114 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 A6NN06 94 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 SLC17A3O00476 420 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 SNAPC5O75971 98 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 SHBGP04278 402 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 CD2P06729 351 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 NKX2-5P52952 324 aaPredicted RBP1.66□□□□□ -2.14
CD44-235ENST00000532339 QRFPP83859 136 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 ERHP84090 104 aaKnown RBP1.66□□□□□ -2.14
CD44-235ENST00000532339 MEF2BQ02080 365 aaPredicted RBP1.66□□□□□ -2.14
CD44-235ENST00000532339 SAPCD1Q5SSQ6 148 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 OR5C1Q8NGR4 320 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 ZNF431Q8TF32 576 aaPredicted RBP1.66□□□□□ -2.14
CD44-235ENST00000532339 MGLLQ99685 303 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 SLC50A1Q9BRV3 221 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 TAS2R8Q9NYW2 309 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 PRNDQ9UKY0 176 aa1.66□□□□□ -2.14
CD44-235ENST00000532339 TMEM212A6NML5 194 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 SNCAP37840 140 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 RPL5P46777 297 aaKnown RBP1.65□□□□□ -2.15
CD44-235ENST00000532339 GID4Q8IVV7 300 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 NIPSNAP1Q9BPW8 284 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 PBDC1Q9BVG4 233 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 ARL2BPQ9Y2Y0 163 aa1.65□□□□□ -2.15
CD44-235ENST00000532339 MEIS3P1A6NDR6 274 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 APOMO95445 188 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 Q6Q795 121 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 PHF5AQ7RTV0 110 aaKnown RBP1.64□□□□□ -2.15
CD44-235ENST00000532339 ARPINQ7Z6K5 226 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 SLC51BQ86UW2 128 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 PACRGLQ8N7B6 248 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 OR5AK2Q8NH90 309 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 ODF3Q96PU9 254 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 TSC22D3Q99576 134 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 CMSS1Q9BQ75 279 aaKnown RBP1.64□□□□□ -2.15
CD44-235ENST00000532339 MND1Q9BWT6 205 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 TXNL4BQ9NX01 149 aaKnown RBP1.64□□□□□ -2.15
CD44-235ENST00000532339 CMTM6Q9NX76 183 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 UBE2D4Q9Y2X8 147 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 TMEM56-RWDD3S4R434 201 aa1.64□□□□□ -2.15
CD44-235ENST00000532339 MUC5ACP98088 5654 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 C7orf71A4D174 169 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 GRIFINA4D1Z8 144 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 CRYM-AS1A6NIL9 109 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 ANGP03950 147 aaKnown RBP1.63□□□□□ -2.15
CD44-235ENST00000532339 SLC25A5P05141 298 aaKnown RBP1.63□□□□□ -2.15
CD44-235ENST00000532339 UBBP0CG47 229 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 LINC00694P0DN24 101 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 GZMBP10144 247 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 SLC25A4P12235 298 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 MYL12AP19105 171 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 ZNF90Q03938 601 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 CATR1Q13166 79 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 MSMO1Q15800 293 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 EIF5AL1Q6IS14 154 aaKnown RBP1.63□□□□□ -2.15
CD44-235ENST00000532339 SPAG11AQ6PDA7 123 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 SFRP2Q96HF1 295 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 ARHGAP5-AS1Q96IT6 56 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 MRPS26Q9BYN8 205 aaKnown RBP1.63□□□□□ -2.15
CD44-235ENST00000532339 SLC39A9Q9NUM3 307 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 GID8Q9NWU2 228 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 CKLFQ9UBR5 152 aa1.63□□□□□ -2.15
CD44-235ENST00000532339 BBIP1A8MTZ0 92 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 TMEM262E9PQX1 116 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 H3BPC8 53 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 S100A6P06703 90 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 HIST1H1EP10412 219 aaKnown RBP1.62□□□□□ -2.15
CD44-235ENST00000532339 HSPE1P61604 102 aaKnown RBP1.62□□□□□ -2.15
CD44-235ENST00000532339 GNG11P61952 73 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 RGS21Q2M5E4 152 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 C9orf116Q5BN46 136 aaPredicted RBP1.62□□□□□ -2.15
CD44-235ENST00000532339 C2orf91Q6ZV80 131 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 RAB2BQ8WUD1 216 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 NDUFA12Q9UI09 145 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 ANAPC10Q9UM13 185 aa1.62□□□□□ -2.15
CD44-235ENST00000532339 DISC1C4P0D8 188 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 J3QLW9 94 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 M0R036 132 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 COX7A2LO14548 114 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 UBE2L6O14933 153 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 CTXN2P0C2S0 81 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 MGST1P10620 155 aaKnown RBP1.61□□□□□ -2.15
CD44-235ENST00000532339 NFYAP23511 347 aaPredicted RBP1.61□□□□□ -2.15
CD44-235ENST00000532339 ARPC4P59998 168 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 RAB5BP61020 215 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 AADACL3Q5VUY0 350 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 Q6ZS49 121 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 LHFPL5Q8TAF8 219 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 ZCCHC13Q8WW36 166 aaKnown RBP1.61□□□□□ -2.15
CD44-235ENST00000532339 DIRAS2Q96HU8 199 aa1.61□□□□□ -2.15
CD44-235ENST00000532339 PAIP2Q9BPZ3 127 aaKnown RBP1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms