RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PMCHP20382 165 aa6.96□□□□□ -1.3
SDCBP-211ENST00000523441 RPS20P60866 119 aaKnown RBP6.96□□□□□ -1.3
SDCBP-211ENST00000523441 CENPWQ5EE01 88 aa6.96□□□□□ -1.3
SDCBP-211ENST00000523441 RNASE13Q5GAN3 156 aaKnown RBP6.96□□□□□ -1.3
SDCBP-211ENST00000523441 EIF5AL1Q6IS14 154 aaKnown RBP6.96□□□□□ -1.3
SDCBP-211ENST00000523441 KCNRGQ8N5I3 272 aa6.96□□□□□ -1.3
SDCBP-211ENST00000523441 MED28Q9H204 178 aa6.96□□□□□ -1.3
SDCBP-211ENST00000523441 SDHAF1A6NFY7 115 aa6.95□□□□□ -1.3
SDCBP-211ENST00000523441 BCL2L11O43521 198 aa6.95□□□□□ -1.3
SDCBP-211ENST00000523441 FOXA3P55318 350 aaPredicted RBP6.95□□□□□ -1.3
SDCBP-211ENST00000523441 UBE2BP63146 152 aa6.95□□□□□ -1.3
SDCBP-211ENST00000523441 CD164L2Q6UWJ8 174 aa6.95□□□□□ -1.3
SDCBP-211ENST00000523441 C5orf38Q86SI9 138 aa6.95□□□□□ -1.3
SDCBP-211ENST00000523441 RAB19A4D1S5 217 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 F2Z2F3 143 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 COX7A2LO14548 114 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 NCR2O95944 276 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 ZNF25P17030 456 aaPredicted RBP6.94□□□□□ -1.3
SDCBP-211ENST00000523441 RETNLBQ9BQ08 111 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 TMEM242Q9NWH2 141 aa6.94□□□□□ -1.3
SDCBP-211ENST00000523441 XKRY2A2RUG3 117 aa6.93□□□□□ -1.3
SDCBP-211ENST00000523441 H7C423 109 aa6.93□□□□□ -1.3
SDCBP-211ENST00000523441 RPL13AP40429 203 aaKnown RBP6.93□□□□□ -1.3
SDCBP-211ENST00000523441 GAGE2EQ4V326 116 aa6.93□□□□□ -1.3
SDCBP-211ENST00000523441 GAGE2DQ9UEU5 116 aa6.93□□□□□ -1.3
SDCBP-211ENST00000523441 I3L3M4 83 aa6.92□□□□□ -1.3
SDCBP-211ENST00000523441 SPAG11BQ08648 103 aa6.92□□□□□ -1.3
SDCBP-211ENST00000523441 MRAP2Q96G30 205 aa6.92□□□□□ -1.3
SDCBP-211ENST00000523441 NDUFA13Q9P0J0 144 aa6.92□□□□□ -1.3
SDCBP-211ENST00000523441 TRAV13-1A0A0B4J241 112 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 C19orf71A6NCJ1 209 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 ARPC5O15511 151 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 GNG4P50150 75 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 CYTL1Q9NRR1 136 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 CDC42SE2Q9NRR3 84 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 GNG13Q9P2W3 67 aa6.91□□□□□ -1.3
SDCBP-211ENST00000523441 MUC17Q685J3 4493 aa6.9□□□□□ -1.3
SDCBP-211ENST00000523441 TSHBP01222 138 aa6.9□□□□□ -1.3
SDCBP-211ENST00000523441 SMIM15Q7Z3B0 74 aa6.9□□□□□ -1.3
SDCBP-211ENST00000523441 M0QXV9 152 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 GIPP09681 153 aaPredicted RBP6.89□□□□□ -1.31
SDCBP-211ENST00000523441 H2AFB1P0C5Y9 115 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 TSKUQ8WUA8 353 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 MBD3L1Q8WWY6 194 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 C2orf48Q96LS8 159 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 MRPL18Q9H0U6 180 aaKnown RBP6.89□□□□□ -1.31
SDCBP-211ENST00000523441 RNASE7Q9H1E1 156 aaKnown RBP6.89□□□□□ -1.31
SDCBP-211ENST00000523441 CDIP1Q9H305 208 aa6.89□□□□□ -1.31
SDCBP-211ENST00000523441 C1orf196B1AJZ1 125 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 CTRLP40313 264 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 CCL20P78556 96 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 C9orf62Q8N4C0 152 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 NUDT10Q8NFP7 164 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 ORAOV1Q8WV07 137 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 NUDT11Q96G61 164 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 ST20Q9HBF5 79 aa6.88□□□□□ -1.31
SDCBP-211ENST00000523441 C7orf77A4D0Y5 90 aa6.87□□□□□ -1.31
SDCBP-211ENST00000523441 ESDP10768 282 aa6.87□□□□□ -1.31
SDCBP-211ENST00000523441 C10orf25Q5T742 122 aa6.87□□□□□ -1.31
SDCBP-211ENST00000523441 LINC00299Q6ZSB3 139 aa6.87□□□□□ -1.31
SDCBP-211ENST00000523441 CRCT1Q9UGL9 99 aa6.87□□□□□ -1.31
SDCBP-211ENST00000523441 FSIP2Q5CZC0 6907 aa6.86□□□□□ -1.31
SDCBP-211ENST00000523441 SMLR1H3BR10 107 aa6.86□□□□□ -1.31
SDCBP-211ENST00000523441 UNQ6190/PRO20217Q6UXQ8 127 aa6.86□□□□□ -1.31
SDCBP-211ENST00000523441 IMMP2LQ96T52 175 aa6.86□□□□□ -1.31
SDCBP-211ENST00000523441 A0A087X002 238 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 NDUFA1O15239 70 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 FCER1GP30273 86 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 Q6ZUT4 128 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 MRPL52Q86TS9 123 aaKnown RBP6.85□□□□□ -1.31
SDCBP-211ENST00000523441 KRTAP7-1Q8IUC3 87 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 TYMSOSQ8TAI1 123 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 C11orf52Q96A22 123 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 RPP21Q9H633 154 aaKnown RBP6.85□□□□□ -1.31
SDCBP-211ENST00000523441 MED9Q9NWA0 146 aa6.85□□□□□ -1.31
SDCBP-211ENST00000523441 TRBV20OR9-2A0A075B6H5 130 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 G3V3Q6 166 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 RNF151Q2KHN1 245 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 TEX261Q6UWH6 196 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 MANBALQ9NQG1 85 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 ANAPC11Q9NYG5 84 aa6.84□□□□□ -1.31
SDCBP-211ENST00000523441 CARHSP1Q9Y2V2 147 aaKnown RBP6.84□□□□□ -1.31
SDCBP-211ENST00000523441 UMAD1C9J7I0 102 aa6.83□□□□□ -1.32
SDCBP-211ENST00000523441 SMKR1H3BMG3 65 aa6.83□□□□□ -1.32
SDCBP-211ENST00000523441 MRPL35Q9NZE8 188 aaKnown RBP6.83□□□□□ -1.32
SDCBP-211ENST00000523441 C6orf48Q9UBA6 75 aa6.83□□□□□ -1.32
SDCBP-211ENST00000523441 ZNF861PO60384 105 aa6.82□□□□□ -1.32
SDCBP-211ENST00000523441 OR10D4PQ8NGN7 298 aa6.82□□□□□ -1.32
SDCBP-211ENST00000523441 CNFNQ9BYD5 112 aa6.82□□□□□ -1.32
SDCBP-211ENST00000523441 BIN3Q9NQY0 253 aa6.82□□□□□ -1.32
SDCBP-211ENST00000523441 UBE2D4Q9Y2X8 147 aa6.82□□□□□ -1.32
SDCBP-211ENST00000523441 TRBV6-5A0A0K0K1A5 114 aa6.81□□□□□ -1.32
SDCBP-211ENST00000523441 SMDT1Q9H4I9 107 aa6.81□□□□□ -1.32
SDCBP-211ENST00000523441 K7EN84 100 aa6.8□□□□□ -1.32
SDCBP-211ENST00000523441 CRYGAP11844 174 aa6.8□□□□□ -1.32
SDCBP-211ENST00000523441 CTDSP1Q9GZU7 261 aa6.8□□□□□ -1.32
SDCBP-211ENST00000523441 IGLV7-46A0A075B6I9 117 aa6.79□□□□□ -1.32
SDCBP-211ENST00000523441 GATCO43716 136 aaKnown RBP6.79□□□□□ -1.32
SDCBP-211ENST00000523441 POLR2KP53803 58 aaKnown RBP6.79□□□□□ -1.32
SDCBP-211ENST00000523441 LINC01547P58512 204 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms