RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CKS2P33552 79 aa6.29□□□□□ -1.4
RNF4-221ENST00000513643 CNBPP62633 177 aaKnown RBP6.29□□□□□ -1.4
RNF4-221ENST00000513643 C10orf91Q5T1B1 145 aa6.29□□□□□ -1.4
RNF4-221ENST00000513643 CLRN3Q8NCR9 226 aa6.29□□□□□ -1.4
RNF4-221ENST00000513643 FAM104AQ969W3 186 aa6.29□□□□□ -1.4
RNF4-221ENST00000513643 IMMP2LQ96T52 175 aa6.29□□□□□ -1.4
RNF4-221ENST00000513643 D6R8Y8 96 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 SLPIP03973 132 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 LINC01620Q4KN68 170 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 C9orf163Q8N9P6 203 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 OR5A1Q8NGJ0 315 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 TIMM21Q9BVV7 248 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 SEC11CQ9BY50 192 aa6.28□□□□□ -1.4
RNF4-221ENST00000513643 C7orf77A4D0Y5 90 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 NPYP01303 97 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 HLA-DQA1P01909 254 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 FOXI1Q12951 378 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 AMMECR1LQ6DCA0 310 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 CHCHD10Q8WYQ3 142 aaPredicted RBP6.27□□□□□ -1.41
RNF4-221ENST00000513643 KIR2DL4Q99706 377 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 SMIM2Q9BVW6 85 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 UBE2D4Q9Y2X8 147 aa6.27□□□□□ -1.41
RNF4-221ENST00000513643 LINC00959A0A1B0GUT2 108 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 GAGE12HA6NDE8 117 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 TCAPO15273 167 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 RNASEKQ6P5S7 137 aaKnown RBP6.26□□□□□ -1.41
RNF4-221ENST00000513643 TMEM136Q6ZRR5 245 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 ORMDL3Q8N138 153 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 ZNF664Q8N3J9 261 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 C15orf56Q8N910 161 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 BTF3L4Q96K17 158 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 CTDSP1Q9GZU7 261 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 PKHD1L1Q86WI1 4243 aa6.26□□□□□ -1.41
RNF4-221ENST00000513643 EPM2AB3EWF7 344 aa6.25□□□□□ -1.41
RNF4-221ENST00000513643 HAMPP81172 84 aa6.25□□□□□ -1.41
RNF4-221ENST00000513643 CIRBPQ14011 172 aaKnown RBP6.25□□□□□ -1.41
RNF4-221ENST00000513643 TMEM101Q96IK0 257 aa6.25□□□□□ -1.41
RNF4-221ENST00000513643 CHAC1Q9BUX1 264 aa6.25□□□□□ -1.41
RNF4-221ENST00000513643 LAMTOR2Q9Y2Q5 125 aa6.25□□□□□ -1.41
RNF4-221ENST00000513643 CARHSP1Q9Y2V2 147 aaKnown RBP6.25□□□□□ -1.41
RNF4-221ENST00000513643 FLG2Q5D862 2391 aaPredicted RBP6.24□□□□□ -1.41
RNF4-221ENST00000513643 TRAV9-1A0A075B6T8 112 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 GVQW2A0A096LPI5 108 aaPredicted RBP6.24□□□□□ -1.41
RNF4-221ENST00000513643 CCL25O15444 150 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 SMR3BP02814 79 aaPredicted RBP6.24□□□□□ -1.41
RNF4-221ENST00000513643 FCER1GP30273 86 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 Q5VSD8 79 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 SCXQ7RTU7 201 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 COMMD7Q86VX2 200 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 PRELID3AQ96N28 172 aa6.24□□□□□ -1.41
RNF4-221ENST00000513643 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
RNF4-221ENST00000513643 KRTAP10-4P60372 401 aaPredicted RBP6.23□□□□□ -1.41
RNF4-221ENST00000513643 MRPS36P82909 103 aaKnown RBP6.23□□□□□ -1.41
RNF4-221ENST00000513643 CFAP161Q6P656 301 aa6.23□□□□□ -1.41
RNF4-221ENST00000513643 CD164L2Q6UWJ8 174 aa6.23□□□□□ -1.41
RNF4-221ENST00000513643 CIRBP-AS1Q8TBR5 109 aa6.23□□□□□ -1.41
RNF4-221ENST00000513643 LRP1Q07954 4544 aaKnown RBP6.23□□□□□ -1.41
RNF4-221ENST00000513643 IGKV3OR2-268A0A0C4DH90 116 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 hDV102S1A0JD36 115 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 PANO1I0J062 215 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 RPL39P62891 51 aaKnown RBP6.22□□□□□ -1.41
RNF4-221ENST00000513643 SMAGPQ0VAQ4 97 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 SPANXA1Q9NS26 97 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 PYGO1Q9Y3Y4 419 aa6.22□□□□□ -1.41
RNF4-221ENST00000513643 C1orf196B1AJZ1 125 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 XCL1P47992 114 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 SS18Q15532 418 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 Q6ZUT4 128 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 Q8N8P6 123 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 TMEM18Q96B42 140 aa6.21□□□□□ -1.42
RNF4-221ENST00000513643 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.21□□□□□ -1.42
RNF4-221ENST00000513643 FAM229AH3BQW9 127 aa6.2□□□□□ -1.42
RNF4-221ENST00000513643 K7EMI3 77 aa6.2□□□□□ -1.42
RNF4-221ENST00000513643 OPRPNQ99935 248 aaPredicted RBP6.2□□□□□ -1.42
RNF4-221ENST00000513643 GNB1LQ9BYB4 327 aa6.2□□□□□ -1.42
RNF4-221ENST00000513643 DMBT1Q9UGM3 2413 aaPredicted RBP6.19□□□□□ -1.42
RNF4-221ENST00000513643 IGHV3OR16-9A0A0B4J2B5 98 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 IGHV1-58A0A0C4DH39 117 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 LINC01546A6NGU7 62 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 RHEBQ15382 184 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 RNASE13Q5GAN3 156 aaKnown RBP6.19□□□□□ -1.42
RNF4-221ENST00000513643 MAP1LC3AQ9H492 121 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 AP5S1Q9NUS5 200 aa6.19□□□□□ -1.42
RNF4-221ENST00000513643 IGHV3-64A0A075B6Q5 118 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.18□□□□□ -1.42
RNF4-221ENST00000513643 IGIPA6NJ69 53 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 NPSP0C0P6 89 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 RAB5AP20339 215 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 HIGD2BQ4VC39 106 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 LINC00528Q8N1L1 170 aa6.18□□□□□ -1.42
RNF4-221ENST00000513643 IGLV4-3A0A075B6K6 122 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 TRAV13-1A0A0B4J241 112 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 LOC389332A0A1B0GUA5 103 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 COX7A2LO14548 114 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 INAFM2P0DMQ5 153 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 COX19Q49B96 90 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 SPACA4Q8TDM5 124 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 AMELXQ99217 191 aa6.17□□□□□ -1.42
RNF4-221ENST00000513643 ALKBH7Q9BT30 221 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms