RNA–Protein interactions for RNA: ENST00000507536.1

PDGFRA-205, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 1,146 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-205ENST00000507536 HMSDA8MTL9 139 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 UBE2L6O14933 153 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 TRGC1P0CF51 173 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 FOXI1Q12951 378 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 C9orf62Q8N4C0 152 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 GTSF1Q8WW33 167 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 SMIM12Q96EX1 92 aa6.4□□□□□ -1.38
PDGFRA-205ENST00000507536 GNG4P50150 75 aa6.39□□□□□ -1.39
PDGFRA-205ENST00000507536 CFAP161Q6P656 301 aa6.39□□□□□ -1.39
PDGFRA-205ENST00000507536 SVIPQ8NHG7 77 aa6.39□□□□□ -1.39
PDGFRA-205ENST00000507536 LYPD6BQ8NI32 183 aa6.39□□□□□ -1.39
PDGFRA-205ENST00000507536 RPL39LQ96EH5 51 aaKnown RBP6.39□□□□□ -1.39
PDGFRA-205ENST00000507536 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 KANTRA0A1W2PQU2 76 aa6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 IGKV2-29A2NJV5 120 aaPredicted RBP6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 IFNA1P01562 189 aa6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 FOXA3P55318 350 aaPredicted RBP6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 MEF2BQ02080 365 aaPredicted RBP6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 SRSF9Q13242 221 aaKnown RBP eCLIP6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 LINC00526Q96FQ7 95 aa6.38□□□□□ -1.39
PDGFRA-205ENST00000507536 XKRY2A2RUG3 117 aa6.37□□□□□ -1.39
PDGFRA-205ENST00000507536 FAM231BA6NCW3 169 aa6.37□□□□□ -1.39
PDGFRA-205ENST00000507536 K7EN84 100 aa6.37□□□□□ -1.39
PDGFRA-205ENST00000507536 FGF6P10767 208 aa6.37□□□□□ -1.39
PDGFRA-205ENST00000507536 SPINK6Q6UWN8 80 aa6.37□□□□□ -1.39
PDGFRA-205ENST00000507536 NCR2O95944 276 aa6.36□□□□□ -1.39
PDGFRA-205ENST00000507536 TWIST1Q15672 202 aa6.36□□□□□ -1.39
PDGFRA-205ENST00000507536 AKAP14Q86UN6 197 aa6.36□□□□□ -1.39
PDGFRA-205ENST00000507536 RNASE7Q9H1E1 156 aaKnown RBP6.36□□□□□ -1.39
PDGFRA-205ENST00000507536 SDHAF1A6NFY7 115 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 H7C423 109 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 PDE6DO43924 150 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 GAS8-AS1O95177 125 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 APCSP02743 223 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 BCL2P10415 239 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 XCL1P47992 114 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 AMMECR1LQ6DCA0 310 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 RNASEKQ6P5S7 137 aaKnown RBP6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 SLC7A5P1Q8MH63 180 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 OR5A1Q8NGJ0 315 aa6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 RPP21Q9H633 154 aaKnown RBP6.35□□□□□ -1.39
PDGFRA-205ENST00000507536 LINC00959A0A1B0GUT2 108 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 CCL25O15444 150 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 TSHBP01222 138 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 ESDP10768 282 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 ZNF25P17030 456 aaPredicted RBP6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 CARD19Q96LW7 228 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 MED9Q9NWA0 146 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 LINC00474Q9P2X8 69 aa6.34□□□□□ -1.39
PDGFRA-205ENST00000507536 IGHV1-58A0A0C4DH39 117 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 TRBV6-5A0A0K0K1A5 114 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 EIF5AP63241 154 aaKnown RBP6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 REG3GQ6UW15 175 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 Q6ZRP5 223 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 OCC1Q8TAD7 63 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 BIN3Q9NQY0 253 aa6.33□□□□□ -1.4
PDGFRA-205ENST00000507536 A0A1W2PNN7 141 aa6.32□□□□□ -1.4
PDGFRA-205ENST00000507536 MUC2Q02817 5179 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 I3L3M4 83 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 SYCNQ0VAF6 134 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 CD164L2Q6UWJ8 174 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 MRPL52Q86TS9 123 aaKnown RBP6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 CDC42SE2Q9NRR3 84 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 TMEM242Q9NWH2 141 aa6.31□□□□□ -1.4
PDGFRA-205ENST00000507536 CAMPP49913 170 aa6.3□□□□□ -1.4
PDGFRA-205ENST00000507536 POLR2KP53803 58 aaKnown RBP6.3□□□□□ -1.4
PDGFRA-205ENST00000507536 TEX261Q6UWH6 196 aa6.3□□□□□ -1.4
PDGFRA-205ENST00000507536 IGLV4-69A0A075B6H9 119 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 LOC105371267A0A1B0GV96 52 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 TEX46H3BTG2 121 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 PMCHP20382 165 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 NUP35Q8NFH5 326 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 MRAP2Q96G30 205 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 BTF3L4Q96K17 158 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 PSORS1C2Q9UIG4 136 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 PKIGQ9Y2B9 76 aa6.29□□□□□ -1.4
PDGFRA-205ENST00000507536 TRBV27A0A0K0K1C4 114 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 LOC107984640A0A0U1RRK4 108 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 IFITM2Q01629 132 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 GAGE2BQ13066 116 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 SS18Q15532 418 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 EIF5AL1Q6IS14 154 aaKnown RBP6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 FAM231DQ6ZW35 169 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 SLC51BQ86UW2 128 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 ZNF664Q8N3J9 261 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 TMEM101Q96IK0 257 aa6.28□□□□□ -1.4
PDGFRA-205ENST00000507536 C7orf77A4D0Y5 90 aa6.27□□□□□ -1.41
PDGFRA-205ENST00000507536 GATCO43716 136 aaKnown RBP6.27□□□□□ -1.41
PDGFRA-205ENST00000507536 TAGLN2P37802 199 aaKnown RBP6.27□□□□□ -1.41
PDGFRA-205ENST00000507536 SMIM15Q7Z3B0 74 aa6.27□□□□□ -1.41
PDGFRA-205ENST00000507536 ST20Q9HBF5 79 aa6.27□□□□□ -1.41
PDGFRA-205ENST00000507536 A8MWL6 223 aa6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 APOMO95445 188 aa6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 C9orf116Q5BN46 136 aaPredicted RBP6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 RNASE13Q5GAN3 156 aaKnown RBP6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 KRTAP11-1Q8IUC1 163 aa6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 FAM104AQ969W3 186 aa6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 TMEM191AQ9H0A3 160 aa6.26□□□□□ -1.41
PDGFRA-205ENST00000507536 UBE2D4Q9Y2X8 147 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms