RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 TMEM101Q96IK0 257 aa9.8□□□□□ -0.84
USP39-217ENST00000491659 FAT1Q14517 4588 aa9.8□□□□□ -0.84
USP39-217ENST00000491659 A0A1B0GW15 77 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 hDV102S1A0JD36 115 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 C1orf196B1AJZ1 125 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 SMKR1H3BMG3 65 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 POLR2KP53803 58 aaKnown RBP9.79□□□□□ -0.84
USP39-217ENST00000491659 RAB5BP61020 215 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 LINC00528Q8N1L1 170 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 CHAC1Q9BUX1 264 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 AP5S1Q9NUS5 200 aa9.79□□□□□ -0.84
USP39-217ENST00000491659 TRBV27A0A0K0K1C4 114 aa9.78□□□□□ -0.84
USP39-217ENST00000491659 GAGE12HA6NDE8 117 aa9.78□□□□□ -0.84
USP39-217ENST00000491659 PLA2G1BP04054 148 aaKnown RBP9.78□□□□□ -0.84
USP39-217ENST00000491659 RAB5AP20339 215 aa9.78□□□□□ -0.84
USP39-217ENST00000491659 CAMPP49913 170 aa9.78□□□□□ -0.84
USP39-217ENST00000491659 VCYO14598 125 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 S100A8P05109 93 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 ESDP10768 282 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 FCER1GP30273 86 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 SUMO2P61956 95 aaKnown RBP9.77□□□□□ -0.85
USP39-217ENST00000491659 MRPL51Q4U2R6 128 aaKnown RBP9.77□□□□□ -0.85
USP39-217ENST00000491659 FAM104BQ5XKR9 115 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 C9orf163Q8N9P6 203 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 OR5A1Q8NGJ0 315 aa9.77□□□□□ -0.85
USP39-217ENST00000491659 CNBPP62633 177 aaKnown RBP9.76□□□□□ -0.85
USP39-217ENST00000491659 MRPL54Q6P161 138 aaKnown RBP9.76□□□□□ -0.85
USP39-217ENST00000491659 CFAP161Q6P656 301 aa9.76□□□□□ -0.85
USP39-217ENST00000491659 NRACQ8N912 160 aa9.76□□□□□ -0.85
USP39-217ENST00000491659 CHCHD10Q8WYQ3 142 aaPredicted RBP9.76□□□□□ -0.85
USP39-217ENST00000491659 IMMP2LQ96T52 175 aa9.76□□□□□ -0.85
USP39-217ENST00000491659 KIR2DL4Q99706 377 aa9.76□□□□□ -0.85
USP39-217ENST00000491659 VPS13BQ7Z7G8 4022 aa9.75□□□□□ -0.85
USP39-217ENST00000491659 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.75□□□□□ -0.85
USP39-217ENST00000491659 HBBP68871 147 aa9.75□□□□□ -0.85
USP39-217ENST00000491659 SMAGPQ0VAQ4 97 aa9.75□□□□□ -0.85
USP39-217ENST00000491659 CIRBP-AS1Q8TBR5 109 aa9.75□□□□□ -0.85
USP39-217ENST00000491659 CKS2P33552 79 aa9.74□□□□□ -0.85
USP39-217ENST00000491659 MRPL52Q86TS9 123 aaKnown RBP9.74□□□□□ -0.85
USP39-217ENST00000491659 YPEL4Q96NS1 127 aa9.74□□□□□ -0.85
USP39-217ENST00000491659 TRBV24-1A0A075B6N3 115 aa9.73□□□□□ -0.85
USP39-217ENST00000491659 LOC105371267A0A1B0GV96 52 aa9.73□□□□□ -0.85
USP39-217ENST00000491659 C15orf56Q8N910 161 aa9.73□□□□□ -0.85
USP39-217ENST00000491659 IGHV3-64A0A075B6Q5 118 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 A0A1B0GXF2 115 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 S100A6P06703 90 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 XCL1P47992 114 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 SS18Q15532 418 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 ZNF664Q8N3J9 261 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 C20orf78Q9BR46 151 aa9.72□□□□□ -0.85
USP39-217ENST00000491659 SRRM2Q9UQ35 2752 aaKnown RBP9.72□□□□□ -0.85
USP39-217ENST00000491659 TRAV9-1A0A075B6T8 112 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 TGIF2-C20orf24A0A0A6YYL0 155 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 LINC00959A0A1B0GUT2 108 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 TCAPO15273 167 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 CCL25O15444 150 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 FOXI1Q12951 378 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 HIGD2BQ4VC39 106 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 ATP5L2Q7Z4Y8 100 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 TMEM18Q96B42 140 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 CDC42SE2Q9NRR3 84 aa9.71□□□□□ -0.86
USP39-217ENST00000491659 D6R8Y8 96 aa9.7□□□□□ -0.86
USP39-217ENST00000491659 TNFRSF6BO95407 300 aa9.7□□□□□ -0.86
USP39-217ENST00000491659 RPL32P62910 135 aaKnown RBP9.7□□□□□ -0.86
USP39-217ENST00000491659 SDIM1Q6ZPB5 146 aa9.7□□□□□ -0.86
USP39-217ENST00000491659 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.7□□□□□ -0.86
USP39-217ENST00000491659 GVQW2A0A096LPI5 108 aaPredicted RBP9.69□□□□□ -0.86
USP39-217ENST00000491659 PPBPP02775 128 aa9.69□□□□□ -0.86
USP39-217ENST00000491659 SLPIP03973 132 aa9.69□□□□□ -0.86
USP39-217ENST00000491659 SMIM2Q9BVW6 85 aa9.69□□□□□ -0.86
USP39-217ENST00000491659 UBE2D4Q9Y2X8 147 aa9.69□□□□□ -0.86
USP39-217ENST00000491659 CSDC2Q9Y534 153 aaKnown RBP9.69□□□□□ -0.86
USP39-217ENST00000491659 PHOX2AO14813 284 aa9.68□□□□□ -0.86
USP39-217ENST00000491659 IGHV1-58A0A0C4DH39 117 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 NPYP01303 97 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 COX19Q49B96 90 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 CD164L2Q6UWJ8 174 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 ORMDL3Q8N138 153 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 TIMM21Q9BVV7 248 aa9.67□□□□□ -0.86
USP39-217ENST00000491659 PANO1I0J062 215 aa9.66□□□□□ -0.86
USP39-217ENST00000491659 RNASE13Q5GAN3 156 aaKnown RBP9.66□□□□□ -0.86
USP39-217ENST00000491659 FLG2Q5D862 2391 aaPredicted RBP9.65□□□□□ -0.86
USP39-217ENST00000491659 RPL37AP61513 92 aaKnown RBP9.65□□□□□ -0.86
USP39-217ENST00000491659 CIRBPQ14011 172 aaKnown RBP9.65□□□□□ -0.86
USP39-217ENST00000491659 Q6ZUT4 128 aa9.65□□□□□ -0.86
USP39-217ENST00000491659 DPH3Q96FX2 82 aa9.65□□□□□ -0.86
USP39-217ENST00000491659 PRELID3AQ96N28 172 aa9.65□□□□□ -0.86
USP39-217ENST00000491659 TRGC2P03986 189 aa9.64□□□□□ -0.87
USP39-217ENST00000491659 CHTF8P0CG12 524 aa9.64□□□□□ -0.87
USP39-217ENST00000491659 TMEM136Q6ZRR5 245 aa9.64□□□□□ -0.87
USP39-217ENST00000491659 PKIGQ9Y2B9 76 aa9.64□□□□□ -0.87
USP39-217ENST00000491659 DMBT1Q9UGM3 2413 aaPredicted RBP9.64□□□□□ -0.87
USP39-217ENST00000491659 TRAV13-1A0A0B4J241 112 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 ZNF561-AS1K7EIQ3 104 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 COX7A2LO14548 114 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 MALP21145 153 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 RPL39P62891 51 aaKnown RBP9.63□□□□□ -0.87
USP39-217ENST00000491659 COX6A2Q02221 97 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 SPACA4Q8TDM5 124 aa9.63□□□□□ -0.87
USP39-217ENST00000491659 SPANXA1Q9NS26 97 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms