RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TRGC1P0CF51 173 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 AMMECR1LQ6DCA0 310 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 FAM231DQ6ZW35 169 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 ISOC2Q96AB3 205 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 LINC00526Q96FQ7 95 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 PSORS1C2Q9UIG4 136 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 A0A0U1RQV1 116 aa10.52□□□□□ -0.73
VIM-204ENST00000478746 F2Z2F3 143 aa10.52□□□□□ -0.73
VIM-204ENST00000478746 PNRC1Q12796 327 aaPredicted RBP10.52□□□□□ -0.73
VIM-204ENST00000478746 FOXI1Q12951 378 aa10.52□□□□□ -0.73
VIM-204ENST00000478746 CARD19Q96LW7 228 aa10.52□□□□□ -0.73
VIM-204ENST00000478746 SEC11CQ9BY50 192 aa10.52□□□□□ -0.73
VIM-204ENST00000478746 RPP21Q9H633 154 aaKnown RBP10.52□□□□□ -0.73
VIM-204ENST00000478746 ADCYAP1P18509 176 aa10.51□□□□□ -0.73
VIM-204ENST00000478746 NDUFA5Q16718 116 aa10.51□□□□□ -0.73
VIM-204ENST00000478746 OSTCQ9NRP0 149 aa10.51□□□□□ -0.73
VIM-204ENST00000478746 TRAV26-2A0A0B4J265 109 aa10.5□□□□□ -0.73
VIM-204ENST00000478746 RNASEKQ6P5S7 137 aaKnown RBP10.5□□□□□ -0.73
VIM-204ENST00000478746 IGHV1-58A0A0C4DH39 117 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 MT-ND6P03923 174 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 NTF3P20783 257 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 PTTG1IPP53801 180 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 SYCNQ0VAF6 134 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 LYZL1Q6UWQ5 148 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 SLC7A5P1Q8MH63 180 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 PRR26Q8N8Z3 221 aa10.49□□□□□ -0.73
VIM-204ENST00000478746 A8MWL6 223 aa10.48□□□□□ -0.73
VIM-204ENST00000478746 XCL1P47992 114 aa10.48□□□□□ -0.73
VIM-204ENST00000478746 GAGE2BQ13066 116 aa10.48□□□□□ -0.73
VIM-204ENST00000478746 CT83Q5H943 113 aa10.48□□□□□ -0.73
VIM-204ENST00000478746 A0A1W2PNN7 141 aa10.47□□□□□ -0.73
VIM-204ENST00000478746 ZNF561-AS1K7EIQ3 104 aa10.47□□□□□ -0.73
VIM-204ENST00000478746 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.46□□□□□ -0.73
VIM-204ENST00000478746 LOC107984640A0A0U1RRK4 108 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 KRTAP9-6A0A140TA67 174 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 IGKV2-29A2NJV5 120 aaPredicted RBP10.46□□□□□ -0.73
VIM-204ENST00000478746 H7C423 109 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 PPP1R2P9O14990 202 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 MT-ND4LP03901 98 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 FGF6P10767 208 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 C1orf137Q5JT78 98 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 C10orf91Q5T1B1 145 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 OR5A1Q8NGJ0 315 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 CARHSP1Q9Y2V2 147 aaKnown RBP10.46□□□□□ -0.73
VIM-204ENST00000478746 V9GYV3 84 aa10.46□□□□□ -0.73
VIM-204ENST00000478746 CCL25O15444 150 aa10.45□□□□□ -0.74
VIM-204ENST00000478746 PRR4Q16378 134 aa10.45□□□□□ -0.74
VIM-204ENST00000478746 GATD1Q8NB37 220 aa10.45□□□□□ -0.74
VIM-204ENST00000478746 TSKUQ8WUA8 353 aa10.45□□□□□ -0.74
VIM-204ENST00000478746 LINC00959A0A1B0GUT2 108 aa10.44□□□□□ -0.74
VIM-204ENST00000478746 NCR2O95944 276 aa10.44□□□□□ -0.74
VIM-204ENST00000478746 TWIST1Q15672 202 aa10.44□□□□□ -0.74
VIM-204ENST00000478746 ANAPC16Q96DE5 110 aa10.44□□□□□ -0.74
VIM-204ENST00000478746 APOC3P02656 99 aa10.43□□□□□ -0.74
VIM-204ENST00000478746 APCSP02743 223 aa10.43□□□□□ -0.74
VIM-204ENST00000478746 CTRLP40313 264 aa10.43□□□□□ -0.74
VIM-204ENST00000478746 DIRC1Q969H9 104 aa10.43□□□□□ -0.74
VIM-204ENST00000478746 ZNF25P17030 456 aaPredicted RBP10.42□□□□□ -0.74
VIM-204ENST00000478746 CAMPP49913 170 aa10.42□□□□□ -0.74
VIM-204ENST00000478746 C9orf116Q5BN46 136 aaPredicted RBP10.42□□□□□ -0.74
VIM-204ENST00000478746 BORCS7Q96B45 105 aa10.42□□□□□ -0.74
VIM-204ENST00000478746 TMEM101Q96IK0 257 aa10.42□□□□□ -0.74
VIM-204ENST00000478746 BTF3L4Q96K17 158 aa10.42□□□□□ -0.74
VIM-204ENST00000478746 CNFNQ9BYD5 112 aa10.42□□□□□ -0.74
VIM-204ENST00000478746 HIGD1CA8MV81 97 aa10.41□□□□□ -0.74
VIM-204ENST00000478746 SS18Q15532 418 aa10.41□□□□□ -0.74
VIM-204ENST00000478746 SVBPQ8N300 66 aa10.41□□□□□ -0.74
VIM-204ENST00000478746 RPL39LQ96EH5 51 aaKnown RBP10.41□□□□□ -0.74
VIM-204ENST00000478746 SNAPINO95295 136 aa10.4□□□□□ -0.74
VIM-204ENST00000478746 FOXA3P55318 350 aaPredicted RBP10.4□□□□□ -0.74
VIM-204ENST00000478746 RHEBQ15382 184 aa10.4□□□□□ -0.74
VIM-204ENST00000478746 CD164L2Q6UWJ8 174 aa10.4□□□□□ -0.74
VIM-204ENST00000478746 PHF5AQ7RTV0 110 aaKnown RBP10.4□□□□□ -0.74
VIM-204ENST00000478746 CTDSP1Q9GZU7 261 aa10.4□□□□□ -0.74
VIM-204ENST00000478746 NAT8BQ9UHF3 227 aa10.4□□□□□ -0.74
VIM-204ENST00000478746 FAT4Q6V0I7 4981 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 IGLV4-69A0A075B6H9 119 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 SMIM27A0A1W2PRY6 76 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 SDHAF1A6NFY7 115 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 IGLV7-43P04211 117 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 SMIM15Q7Z3B0 74 aa10.39□□□□□ -0.75
VIM-204ENST00000478746 IGLV1-50A0A075B6I6 118 aa10.38□□□□□ -0.75
VIM-204ENST00000478746 A0A1B0GUT8 65 aa10.38□□□□□ -0.75
VIM-204ENST00000478746 C7orf77A4D0Y5 90 aa10.38□□□□□ -0.75
VIM-204ENST00000478746 NUP35Q8NFH5 326 aa10.38□□□□□ -0.75
VIM-204ENST00000478746 RPS10P5Q9NQ39 176 aa10.38□□□□□ -0.75
VIM-204ENST00000478746 H0Y9J4 135 aa10.37□□□□□ -0.75
VIM-204ENST00000478746 APOMO95445 188 aa10.37□□□□□ -0.75
VIM-204ENST00000478746 PMCHP20382 165 aa10.37□□□□□ -0.75
VIM-204ENST00000478746 CAMK2N2Q96S95 79 aa10.37□□□□□ -0.75
VIM-204ENST00000478746 I3L3M4 83 aa10.36□□□□□ -0.75
VIM-204ENST00000478746 MALP21145 153 aa10.36□□□□□ -0.75
VIM-204ENST00000478746 RIGQ13278 110 aa10.36□□□□□ -0.75
VIM-204ENST00000478746 LCE2AQ5TA79 106 aaPredicted RBP10.36□□□□□ -0.75
VIM-204ENST00000478746 A0A087WZ39 114 aa10.35□□□□□ -0.75
VIM-204ENST00000478746 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.35□□□□□ -0.75
VIM-204ENST00000478746 RPL18AQ02543 176 aaKnown RBP10.35□□□□□ -0.75
VIM-204ENST00000478746 CDC42SE2Q9NRR3 84 aa10.35□□□□□ -0.75
VIM-204ENST00000478746 TMEM242Q9NWH2 141 aa10.35□□□□□ -0.75
VIM-204ENST00000478746 S100PP25815 95 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms