RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 UQCC3Q6UW78 93 aa14.75□□□□□ -0.05
TRAF4-211ENST00000478021 MRPL52Q86TS9 123 aaKnown RBP14.75□□□□□ -0.05
TRAF4-211ENST00000478021 C20orf78Q9BR46 151 aa14.75□□□□□ -0.05
TRAF4-211ENST00000478021 TRBV24-1A0A075B6N3 115 aa14.74□□□□□ -0.05
TRAF4-211ENST00000478021 CLRN3Q8NCR9 226 aa14.74□□□□□ -0.05
TRAF4-211ENST00000478021 SMIM2Q9BVW6 85 aa14.73□□□□□ -0.05
TRAF4-211ENST00000478021 TMEM218A2RU14 115 aa14.72□□□□□ -0.05
TRAF4-211ENST00000478021 DGAT2L7PQ6IED9 249 aa14.72□□□□□ -0.05
TRAF4-211ENST00000478021 CDC42SE2Q9NRR3 84 aa14.72□□□□□ -0.05
TRAF4-211ENST00000478021 LINC00959A0A1B0GUT2 108 aa14.71□□□□□ -0.05
TRAF4-211ENST00000478021 RPL32P62910 135 aaKnown RBP14.71□□□□□ -0.05
TRAF4-211ENST00000478021 SCXQ7RTU7 201 aa14.71□□□□□ -0.05
TRAF4-211ENST00000478021 ZNF664Q8N3J9 261 aa14.71□□□□□ -0.05
TRAF4-211ENST00000478021 C15orf56Q8N910 161 aa14.71□□□□□ -0.05
TRAF4-211ENST00000478021 CCL25O15444 150 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 PPBPP02775 128 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 XCL1P47992 114 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 TMEM136Q6ZRR5 245 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 COMMD7Q86VX2 200 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 ORMDL3Q8N138 153 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 C9orf163Q8N9P6 203 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 UBE2D4Q9Y2X8 147 aa14.7□□□□□ -0.06
TRAF4-211ENST00000478021 FAM229AH3BQW9 127 aa14.69□□□□□ -0.06
TRAF4-211ENST00000478021 FOXI1Q12951 378 aa14.69□□□□□ -0.06
TRAF4-211ENST00000478021 RNASE13Q5GAN3 156 aaKnown RBP14.69□□□□□ -0.06
TRAF4-211ENST00000478021 PRELID3AQ96N28 172 aa14.69□□□□□ -0.06
TRAF4-211ENST00000478021 TCAPO15273 167 aa14.68□□□□□ -0.06
TRAF4-211ENST00000478021 HIGD2BQ4VC39 106 aa14.68□□□□□ -0.06
TRAF4-211ENST00000478021 AP5S1Q9NUS5 200 aa14.68□□□□□ -0.06
TRAF4-211ENST00000478021 PHOX2AO14813 284 aa14.67□□□□□ -0.06
TRAF4-211ENST00000478021 CFAP161Q6P656 301 aa14.67□□□□□ -0.06
TRAF4-211ENST00000478021 TMEM18Q96B42 140 aa14.67□□□□□ -0.06
TRAF4-211ENST00000478021 CHAC1Q9BUX1 264 aa14.67□□□□□ -0.06
TRAF4-211ENST00000478021 SLPIP03973 132 aa14.66□□□□□ -0.06
TRAF4-211ENST00000478021 CNBPP62633 177 aaKnown RBP14.66□□□□□ -0.06
TRAF4-211ENST00000478021 RPL39P62891 51 aaKnown RBP14.66□□□□□ -0.06
TRAF4-211ENST00000478021 SMAGPQ0VAQ4 97 aa14.66□□□□□ -0.06
TRAF4-211ENST00000478021 SS18Q15532 418 aa14.66□□□□□ -0.06
TRAF4-211ENST00000478021 Q6ZUT4 128 aa14.66□□□□□ -0.06
TRAF4-211ENST00000478021 FAT1Q14517 4588 aa14.66□□□□□ -0.06
TRAF4-211ENST00000478021 VPS13BQ7Z7G8 4022 aa14.65□□□□□ -0.06
TRAF4-211ENST00000478021 CIRBP-AS1Q8TBR5 109 aa14.65□□□□□ -0.06
TRAF4-211ENST00000478021 SEC11CQ9BY50 192 aa14.65□□□□□ -0.06
TRAF4-211ENST00000478021 CSDC2Q9Y534 153 aaKnown RBP14.65□□□□□ -0.06
TRAF4-211ENST00000478021 INAFM2P0DMQ5 153 aa14.64□□□□□ -0.07
TRAF4-211ENST00000478021 LINC00528Q8N1L1 170 aa14.64□□□□□ -0.07
TRAF4-211ENST00000478021 LOC389332A0A1B0GUA5 103 aa14.63□□□□□ -0.07
TRAF4-211ENST00000478021 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.62□□□□□ -0.07
TRAF4-211ENST00000478021 SDIM1Q6ZPB5 146 aa14.62□□□□□ -0.07
TRAF4-211ENST00000478021 IMMP2LQ96T52 175 aa14.62□□□□□ -0.07
TRAF4-211ENST00000478021 TIMM21Q9BVV7 248 aa14.62□□□□□ -0.07
TRAF4-211ENST00000478021 CTDSP1Q9GZU7 261 aa14.62□□□□□ -0.07
TRAF4-211ENST00000478021 TRAV13-1A0A0B4J241 112 aa14.61□□□□□ -0.07
TRAF4-211ENST00000478021 PANO1I0J062 215 aa14.61□□□□□ -0.07
TRAF4-211ENST00000478021 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.61□□□□□ -0.07
TRAF4-211ENST00000478021 IGHV3-64A0A075B6Q5 118 aa14.6□□□□□ -0.07
TRAF4-211ENST00000478021 GVQW2A0A096LPI5 108 aaPredicted RBP14.6□□□□□ -0.07
TRAF4-211ENST00000478021 RAB5AP20339 215 aa14.6□□□□□ -0.07
TRAF4-211ENST00000478021 CD164L2Q6UWJ8 174 aa14.6□□□□□ -0.07
TRAF4-211ENST00000478021 OPRPNQ99935 248 aaPredicted RBP14.6□□□□□ -0.07
TRAF4-211ENST00000478021 MAP1LC3AQ9H492 121 aa14.6□□□□□ -0.07
TRAF4-211ENST00000478021 LAMTOR2Q9Y2Q5 125 aa14.6□□□□□ -0.07
TRAF4-211ENST00000478021 IGHV1-58A0A0C4DH39 117 aa14.58□□□□□ -0.08
TRAF4-211ENST00000478021 C1orf196B1AJZ1 125 aa14.58□□□□□ -0.08
TRAF4-211ENST00000478021 FAM104AQ969W3 186 aa14.58□□□□□ -0.08
TRAF4-211ENST00000478021 LINC00526Q96FQ7 95 aa14.58□□□□□ -0.08
TRAF4-211ENST00000478021 SPANXA1Q9NS26 97 aa14.58□□□□□ -0.08
TRAF4-211ENST00000478021 PRSS47A8MTI9 375 aa14.57□□□□□ -0.08
TRAF4-211ENST00000478021 PLA2G1BP04054 148 aaKnown RBP14.56□□□□□ -0.08
TRAF4-211ENST00000478021 CHTF8P0CG12 524 aa14.55□□□□□ -0.08
TRAF4-211ENST00000478021 KIAA1644Q3SXP7 199 aa14.55□□□□□ -0.08
TRAF4-211ENST00000478021 C10orf91Q5T1B1 145 aa14.55□□□□□ -0.08
TRAF4-211ENST00000478021 Q8N8P6 123 aa14.55□□□□□ -0.08
TRAF4-211ENST00000478021 TRAV9-1A0A075B6T8 112 aa14.54□□□□□ -0.08
TRAF4-211ENST00000478021 MALP21145 153 aa14.54□□□□□ -0.08
TRAF4-211ENST00000478021 S100PP25815 95 aa14.54□□□□□ -0.08
TRAF4-211ENST00000478021 CARHSP1Q9Y2V2 147 aaKnown RBP14.54□□□□□ -0.08
TRAF4-211ENST00000478021 COX7A2LO14548 114 aa14.53□□□□□ -0.08
TRAF4-211ENST00000478021 MRPS36P82909 103 aaKnown RBP14.53□□□□□ -0.08
TRAF4-211ENST00000478021 C5orf38Q86SI9 138 aa14.53□□□□□ -0.08
TRAF4-211ENST00000478021 IFI27P40305 119 aaPredicted RBP14.52□□□□□ -0.09
TRAF4-211ENST00000478021 COX6A2Q02221 97 aa14.52□□□□□ -0.09
TRAF4-211ENST00000478021 RPS10P5Q9NQ39 176 aa14.52□□□□□ -0.09
TRAF4-211ENST00000478021 IFITM10A6NMD0 228 aa14.51□□□□□ -0.09
TRAF4-211ENST00000478021 CIRBPQ14011 172 aaKnown RBP14.51□□□□□ -0.09
TRAF4-211ENST00000478021 PRSS3P2Q8NHM4 247 aa14.51□□□□□ -0.09
TRAF4-211ENST00000478021 ZNF561-AS1K7EIQ3 104 aa14.5□□□□□ -0.09
TRAF4-211ENST00000478021 DPH3Q96FX2 82 aa14.5□□□□□ -0.09
TRAF4-211ENST00000478021 IGLV4-3A0A075B6K6 122 aa14.49□□□□□ -0.09
TRAF4-211ENST00000478021 RHEBQ15382 184 aa14.49□□□□□ -0.09
TRAF4-211ENST00000478021 CARD19Q96LW7 228 aa14.49□□□□□ -0.09
TRAF4-211ENST00000478021 SRRM2Q9UQ35 2752 aaKnown RBP14.49□□□□□ -0.09
TRAF4-211ENST00000478021 HERC1Q15751 4861 aa14.49□□□□□ -0.09
TRAF4-211ENST00000478021 IGLV4-69A0A075B6H9 119 aa14.48□□□□□ -0.09
TRAF4-211ENST00000478021 C2orf66Q6UXQ4 117 aa14.48□□□□□ -0.09
TRAF4-211ENST00000478021 SPACA4Q8TDM5 124 aa14.48□□□□□ -0.09
TRAF4-211ENST00000478021 CYSLTR1Q9Y271 337 aa14.48□□□□□ -0.09
TRAF4-211ENST00000478021 PYGO1Q9Y3Y4 419 aa14.48□□□□□ -0.09
TRAF4-211ENST00000478021 IGKV2-24A0A0C4DH68 120 aa14.47□□□□□ -0.09
TRAF4-211ENST00000478021 GNB1LQ9BYB4 327 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms