RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 LINC00862A6NCI5 91 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 CKS2P33552 79 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 CNBPP62633 177 aaKnown RBP13.64□□□□□ -0.23
LIME1-204ENST00000476183 IFITM2Q01629 132 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 LINC00528Q8N1L1 170 aa13.64□□□□□ -0.23
LIME1-204ENST00000476183 TRBV24-1A0A075B6N3 115 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 PPP1R2P9O14990 202 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 FCER1GP30273 86 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 CDC42SE2Q9NRR3 84 aa13.63□□□□□ -0.23
LIME1-204ENST00000476183 D6R8Y8 96 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 S100A8P05109 93 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 PNRC1Q12796 327 aaPredicted RBP13.62□□□□□ -0.23
LIME1-204ENST00000476183 FOXI1Q12951 378 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 C20orf78Q9BR46 151 aa13.62□□□□□ -0.23
LIME1-204ENST00000476183 LINC00959A0A1B0GUT2 108 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 F8W036 122 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 TNFRSF6BO95407 300 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 SDIM1Q6ZPB5 146 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 KIR2DL4Q99706 377 aa13.61□□□□□ -0.23
LIME1-204ENST00000476183 PANO1I0J062 215 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 RPL32P62910 135 aaKnown RBP13.6□□□□□ -0.23
LIME1-204ENST00000476183 ATP5L2Q7Z4Y8 100 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 ZNF664Q8N3J9 261 aa13.6□□□□□ -0.23
LIME1-204ENST00000476183 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.6□□□□□ -0.23
LIME1-204ENST00000476183 NPYP01303 97 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 XCL1P47992 114 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 AP5S1Q9NUS5 200 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 UBE2D4Q9Y2X8 147 aa13.59□□□□□ -0.23
LIME1-204ENST00000476183 CCL25O15444 150 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 MT-ND4LP03901 98 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 HIGD2BQ4VC39 106 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 CFAP161Q6P656 301 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 ANAPC16Q96DE5 110 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 SMIM2Q9BVW6 85 aa13.58□□□□□ -0.24
LIME1-204ENST00000476183 CSDC2Q9Y534 153 aaKnown RBP13.57□□□□□ -0.24
LIME1-204ENST00000476183 PLA2G1BP04054 148 aaKnown RBP13.56□□□□□ -0.24
LIME1-204ENST00000476183 ADCYAP1P18509 176 aa13.56□□□□□ -0.24
LIME1-204ENST00000476183 RNASE13Q5GAN3 156 aaKnown RBP13.56□□□□□ -0.24
LIME1-204ENST00000476183 DMBT1Q9UGM3 2413 aaPredicted RBP13.55□□□□□ -0.24
LIME1-204ENST00000476183 HERC1Q15751 4861 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 GVQW2A0A096LPI5 108 aaPredicted RBP13.55□□□□□ -0.24
LIME1-204ENST00000476183 PHOX2AO14813 284 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 PPBPP02775 128 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 SS18Q15532 418 aa13.55□□□□□ -0.24
LIME1-204ENST00000476183 IGHV3-64A0A075B6Q5 118 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 KRTAP10-4P60372 401 aaPredicted RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 RPL39P62891 51 aaKnown RBP13.54□□□□□ -0.24
LIME1-204ENST00000476183 TMEM136Q6ZRR5 245 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 ORMDL3Q8N138 153 aa13.54□□□□□ -0.24
LIME1-204ENST00000476183 TCAPO15273 167 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 CD164L2Q6UWJ8 174 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 Q6ZUT4 128 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 TIMM21Q9BVV7 248 aa13.53□□□□□ -0.24
LIME1-204ENST00000476183 TMEM218A2RU14 115 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 SMAGPQ0VAQ4 97 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 CIRBPQ14011 172 aaKnown RBP13.52□□□□□ -0.25
LIME1-204ENST00000476183 UQCC3Q6UW78 93 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 FAM104AQ969W3 186 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 TMEM18Q96B42 140 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 PRELID3AQ96N28 172 aa13.52□□□□□ -0.25
LIME1-204ENST00000476183 IGHV1-58A0A0C4DH39 117 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 CHTF8P0CG12 524 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 LINC00526Q96FQ7 95 aa13.5□□□□□ -0.25
LIME1-204ENST00000476183 TRAV13-1A0A0B4J241 112 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 C1orf196B1AJZ1 125 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 PKHD1L1Q86WI1 4243 aa13.49□□□□□ -0.25
LIME1-204ENST00000476183 OPRPNQ99935 248 aaPredicted RBP13.48□□□□□ -0.25
LIME1-204ENST00000476183 COX6A2Q02221 97 aa13.47□□□□□ -0.25
LIME1-204ENST00000476183 PRSS47A8MTI9 375 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 PRSS3P2Q8NHM4 247 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 SPACA4Q8TDM5 124 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 IMMP2LQ96T52 175 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 SPANXA1Q9NS26 97 aa13.46□□□□□ -0.25
LIME1-204ENST00000476183 LRP1Q07954 4544 aaKnown RBP13.45□□□□□ -0.26
LIME1-204ENST00000476183 LOC389332A0A1B0GUA5 103 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 COMMD7Q86VX2 200 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 LAMTOR2Q9Y2Q5 125 aa13.45□□□□□ -0.26
LIME1-204ENST00000476183 A0A087WYN8 130 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 COX7A2LO14548 114 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 RAB5AP20339 215 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 MRPS36P82909 103 aaKnown RBP13.44□□□□□ -0.26
LIME1-204ENST00000476183 SEC11CQ9BY50 192 aa13.44□□□□□ -0.26
LIME1-204ENST00000476183 C5orf38Q86SI9 138 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 CTDSP1Q9GZU7 261 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 MAP1LC3AQ9H492 121 aa13.43□□□□□ -0.26
LIME1-204ENST00000476183 FAT3Q8TDW7 4589 aa13.42□□□□□ -0.26
LIME1-204ENST00000476183 RPL37AP61513 92 aaKnown RBP13.42□□□□□ -0.26
LIME1-204ENST00000476183 DPH3Q96FX2 82 aa13.42□□□□□ -0.26
LIME1-204ENST00000476183 ZNF561-AS1K7EIQ3 104 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 MALP21145 153 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 Q8N8P6 123 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 CARD19Q96LW7 228 aa13.41□□□□□ -0.26
LIME1-204ENST00000476183 IGLV4-69A0A075B6H9 119 aa13.4□□□□□ -0.26
LIME1-204ENST00000476183 IGKV2-24A0A0C4DH68 120 aa13.4□□□□□ -0.26
LIME1-204ENST00000476183 A0A096LNI7 61 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 SYCNQ0VAF6 134 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 PLAC8Q9NZF1 115 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 PYGO1Q9Y3Y4 419 aa13.39□□□□□ -0.27
LIME1-204ENST00000476183 IGLV4-3A0A075B6K6 122 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms