RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 PRR15LQ9BU68 103 aa2.32□□□□□ -2.04
UBR3-208ENST00000474426 M0R1W7 72 aa2.32□□□□□ -2.04
UBR3-208ENST00000474426 IGLV3-19P01714 112 aa2.32□□□□□ -2.04
UBR3-208ENST00000474426 RNASE1P07998 156 aaKnown RBP2.32□□□□□ -2.04
UBR3-208ENST00000474426 RPP21Q9H633 154 aaKnown RBP2.32□□□□□ -2.04
UBR3-208ENST00000474426 UNC13CQ8NB66 2214 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 CR1P17927 2039 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 ARHGAP5-AS1Q96IT6 56 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 DNAH14Q0VDD8 3507 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 TRAV12-3A0A0B4J271 114 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 CTSGP08311 255 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 FREM3P0C091 2139 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 NPBQ8NG41 125 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 OCR1Q9BZK8 76 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 IGKV1D-42A0A075B6H8 117 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 IGHV3OR16-8A0A075B7F1 116 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 IGHV3-21A0A0B4J1V1 117 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 H3BSH0 61 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 C9orf129Q5T035 196 aaKnown RBP2.31□□□□□ -2.04
UBR3-208ENST00000474426 ZNF833PQ6ZTB9 187 aa2.31□□□□□ -2.04
UBR3-208ENST00000474426 CACNA1IQ9P0X4 2223 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 M0R3E3 92 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 IGLV1-44P01699 117 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 EIF4EBP1Q13541 118 aaPredicted RBP2.3□□□□□ -2.04
UBR3-208ENST00000474426 NREPQ16612 68 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 LINC01590Q5TEZ4 76 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 LINC00322Q6ZN03 302 aaPredicted RBP2.3□□□□□ -2.04
UBR3-208ENST00000474426 IAPPP10997 89 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 C7orf33Q8WU49 177 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 DEC1Q9P2X7 70 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 ALPK2Q86TB3 2170 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 C17orf98A8MV24 154 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 LOC730098B7Z3J9 87 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 PATE4P0C8F1 98 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 Q6ZSN1 163 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 CHD7Q9P2D1 2997 aa2.3□□□□□ -2.04
UBR3-208ENST00000474426 CACNA1DQ01668 2161 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 NNATQ16517 81 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 SPANXN5Q5MJ07 72 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 C20orf166-AS1Q96NR2 134 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 CAMK2N2Q96S95 79 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 C14orf132Q9NPU4 83 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 PLAC8Q9NZF1 115 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 ZFHX2Q9C0A1 2572 aaPredicted RBP2.29□□□□□ -2.04
UBR3-208ENST00000474426 CELSR3Q9NYQ7 3312 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 IGHV3-15A0A0B4J1V0 119 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 A0A1B0GUT8 65 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 FAM27BQ5VT28 67 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 LINC01006Q8NI28 216 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 TTTY12Q9BZ98 90 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 IGHV7-4-1A0A0J9YVY3 117 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 PROP1O75360 226 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 SAA2P0DJI9 122 aaPredicted RBP2.29□□□□□ -2.04
UBR3-208ENST00000474426 CIRBP-AS1Q8TBR5 109 aa2.29□□□□□ -2.04
UBR3-208ENST00000474426 IGLV5-37A0A075B6J1 123 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 IGLV2-18A0A075B6J9 118 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 Q8TAT8 98 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 TRBV6-5A0A0K0K1A5 114 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 LCE6AA0A183 80 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 FXYD4P59646 89 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 LINC00483Q53H64 154 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 TMEM167BQ9NRX6 74 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 VCANP13611 3396 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 IGHV3-49A0A0A0MS15 119 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 IGHV3-73A0A0B4J1V6 119 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 MUC7Q8TAX7 377 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 ZNF625Q96I27 306 aaPredicted RBP2.28□□□□□ -2.04
UBR3-208ENST00000474426 HIGD2AQ9BW72 106 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 SSC5DA1L4H1 1573 aa2.28□□□□□ -2.04
UBR3-208ENST00000474426 M0R135 149 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 IGKV1-17P01599 117 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 Q8N3U1 123 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 CEP350Q5VT06 3117 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 A8MUU9 505 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 ZCCHC13Q8WW36 166 aaKnown RBP2.27□□□□□ -2.05
UBR3-208ENST00000474426 WDFY3Q8IZQ1 3526 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 IGKV1D-37A0A075B6S9 117 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 A0A1B0GVX0 72 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 LITAFQ99732 161 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 SHANK1Q9Y566 2161 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 IGHV4-30-2A0A087WSY4 118 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 IGKV3D-11A0A0A0MRZ8 115 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 A0A0J9YX75 114 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 TLX1NBP0CAT3 122 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 DNAH10OSP0CZ25 163 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 SPINK7P58062 85 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 DAZAP2Q15038 168 aaPredicted RBP2.27□□□□□ -2.05
UBR3-208ENST00000474426 LINC00467Q9BRT7 94 aa2.27□□□□□ -2.05
UBR3-208ENST00000474426 C9orf47Q6ZRZ4 202 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 PRR34Q9NV39 138 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 TMEM14CQ9P0S9 112 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 HTTP42858 3142 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 ADAMTS9Q9P2N4 1935 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 TNCP24821 2201 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 CFAP54Q96N23 3096 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 IGLV8-61A0A075B6I0 122 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 IGLV4-3A0A075B6K6 122 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 IGHV4-4A0A075B6R2 117 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 IGKV1OR2-108A0A075B7D4 117 aa2.26□□□□□ -2.05
UBR3-208ENST00000474426 NDUFAF8A1L188 74 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms