RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PRELID3AQ96N28 172 aa9.3□□□□□ -0.92
VAMP4-203ENST00000474047 hDV102S1A0JD36 115 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 PHOX2AO14813 284 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 RPL32P62910 135 aaKnown RBP9.29□□□□□ -0.92
VAMP4-203ENST00000474047 CFAP161Q6P656 301 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 MRPL52Q86TS9 123 aaKnown RBP9.29□□□□□ -0.92
VAMP4-203ENST00000474047 CHCHD10Q8WYQ3 142 aaPredicted RBP9.29□□□□□ -0.92
VAMP4-203ENST00000474047 IMMP2LQ96T52 175 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 SMIM2Q9BVW6 85 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 AP5S1Q9NUS5 200 aa9.29□□□□□ -0.92
VAMP4-203ENST00000474047 RAB5AP20339 215 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 SS18Q15532 418 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 ZNF664Q8N3J9 261 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 S100PP25815 95 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 HAMPP81172 84 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 CDC42SE2Q9NRR3 84 aa9.28□□□□□ -0.92
VAMP4-203ENST00000474047 FAM30AQ9NZY2 134 aa9.27□□□□□ -0.93
VAMP4-203ENST00000474047 LINC00959A0A1B0GUT2 108 aa9.26□□□□□ -0.93
VAMP4-203ENST00000474047 EPM2AB3EWF7 344 aa9.26□□□□□ -0.93
VAMP4-203ENST00000474047 XCL1P47992 114 aa9.26□□□□□ -0.93
VAMP4-203ENST00000474047 MAP1LC3AQ9H492 121 aa9.26□□□□□ -0.93
VAMP4-203ENST00000474047 LAMTOR2Q9Y2Q5 125 aa9.26□□□□□ -0.93
VAMP4-203ENST00000474047 LOC389332A0A1B0GUA5 103 aa9.25□□□□□ -0.93
VAMP4-203ENST00000474047 CCL25O15444 150 aa9.25□□□□□ -0.93
VAMP4-203ENST00000474047 SMR3BP02814 79 aaPredicted RBP9.25□□□□□ -0.93
VAMP4-203ENST00000474047 KRTAP4-5Q9BYR2 181 aa9.25□□□□□ -0.93
VAMP4-203ENST00000474047 UBE2D4Q9Y2X8 147 aa9.25□□□□□ -0.93
VAMP4-203ENST00000474047 CSDC2Q9Y534 153 aaKnown RBP9.25□□□□□ -0.93
VAMP4-203ENST00000474047 LRP1BQ9NZR2 4599 aa9.25□□□□□ -0.93
VAMP4-203ENST00000474047 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.25□□□□□ -0.93
VAMP4-203ENST00000474047 TRAV9-1A0A075B6T8 112 aa9.24□□□□□ -0.93
VAMP4-203ENST00000474047 FAM229AH3BQW9 127 aa9.24□□□□□ -0.93
VAMP4-203ENST00000474047 RNASE13Q5GAN3 156 aaKnown RBP9.24□□□□□ -0.93
VAMP4-203ENST00000474047 TIMM21Q9BVV7 248 aa9.24□□□□□ -0.93
VAMP4-203ENST00000474047 RPS10P5Q9NQ39 176 aa9.24□□□□□ -0.93
VAMP4-203ENST00000474047 RPL39P62891 51 aaKnown RBP9.23□□□□□ -0.93
VAMP4-203ENST00000474047 C1orf196B1AJZ1 125 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 FOXI1Q12951 378 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 C9orf163Q8N9P6 203 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 TRAV13-1A0A0B4J241 112 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 RHEBQ15382 184 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 HIGD2BQ4VC39 106 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 CD164L2Q6UWJ8 174 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 Q6ZSA8 131 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 SPANXA1Q9NS26 97 aa9.22□□□□□ -0.93
VAMP4-203ENST00000474047 CARHSP1Q9Y2V2 147 aaKnown RBP9.22□□□□□ -0.93
VAMP4-203ENST00000474047 DNAH5Q8TE73 4624 aa9.21□□□□□ -0.93
VAMP4-203ENST00000474047 CNBPP62633 177 aaKnown RBP9.21□□□□□ -0.94
VAMP4-203ENST00000474047 NDUFA5Q16718 116 aa9.21□□□□□ -0.94
VAMP4-203ENST00000474047 C10orf91Q5T1B1 145 aa9.21□□□□□ -0.94
VAMP4-203ENST00000474047 Q5VSD8 79 aa9.21□□□□□ -0.94
VAMP4-203ENST00000474047 Q6ZUT4 128 aa9.21□□□□□ -0.94
VAMP4-203ENST00000474047 C15orf56Q8N910 161 aa9.21□□□□□ -0.94
VAMP4-203ENST00000474047 MALP21145 153 aa9.2□□□□□ -0.94
VAMP4-203ENST00000474047 IFI27P40305 119 aaPredicted RBP9.2□□□□□ -0.94
VAMP4-203ENST00000474047 Q8N8P6 123 aa9.2□□□□□ -0.94
VAMP4-203ENST00000474047 IGHV3-64A0A075B6Q5 118 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 IGHV1-58A0A0C4DH39 117 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 PRSS47A8MTI9 375 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 KIAA1644Q3SXP7 199 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 DPH3Q96FX2 82 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 CHAC1Q9BUX1 264 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 APOC3P02656 99 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 COX19Q49B96 90 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 SCXQ7RTU7 201 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 NXT2Q9NPJ8 142 aaKnown RBP9.19□□□□□ -0.94
VAMP4-203ENST00000474047 HSPG2P98160 4391 aa9.19□□□□□ -0.94
VAMP4-203ENST00000474047 COX7A2LO14548 114 aa9.18□□□□□ -0.94
VAMP4-203ENST00000474047 ORMDL2Q53FV1 153 aa9.18□□□□□ -0.94
VAMP4-203ENST00000474047 OPRPNQ99935 248 aaPredicted RBP9.18□□□□□ -0.94
VAMP4-203ENST00000474047 GNB1LQ9BYB4 327 aa9.18□□□□□ -0.94
VAMP4-203ENST00000474047 GVQW2A0A096LPI5 108 aaPredicted RBP9.17□□□□□ -0.94
VAMP4-203ENST00000474047 ZNF561-AS1K7EIQ3 104 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 MRPS36P82909 103 aaKnown RBP9.17□□□□□ -0.94
VAMP4-203ENST00000474047 CYSLTR1Q9Y271 337 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 IFITM10A6NMD0 228 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 SNAPINO95295 136 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 SLPIP03973 132 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 SDIM1Q6ZPB5 146 aa9.17□□□□□ -0.94
VAMP4-203ENST00000474047 APOBP04114 4563 aaKnown RBP9.16□□□□□ -0.94
VAMP4-203ENST00000474047 K7EMI3 77 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 G0S2P27469 103 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 LINC00528Q8N1L1 170 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 SVBPQ8N300 66 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 PRSS3P2Q8NHM4 247 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 CIRBP-AS1Q8TBR5 109 aa9.16□□□□□ -0.94
VAMP4-203ENST00000474047 APOMO95445 188 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 MT-ND6P03923 174 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 PLA2G1BP04054 148 aaKnown RBP9.15□□□□□ -0.94
VAMP4-203ENST00000474047 FABP9Q0Z7S8 132 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 C2orf66Q6UXQ4 117 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 C5orf38Q86SI9 138 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 TMEM141Q96I45 108 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 PYGO1Q9Y3Y4 419 aa9.15□□□□□ -0.94
VAMP4-203ENST00000474047 INAFM2P0DMQ5 153 aa9.14□□□□□ -0.95
VAMP4-203ENST00000474047 Q6ZN92 141 aa9.14□□□□□ -0.95
VAMP4-203ENST00000474047 LINC00526Q96FQ7 95 aa9.14□□□□□ -0.95
VAMP4-203ENST00000474047 MRPL18Q9H0U6 180 aaKnown RBP9.14□□□□□ -0.95
VAMP4-203ENST00000474047 TEX43Q6ZNM6 134 aa9.14□□□□□ -0.95
VAMP4-203ENST00000474047 IGLV4-3A0A075B6K6 122 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 319.2 ms