RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PMCHP20382 165 aa12.51□□□□□ -0.41
COL9A3-210ENST00000472880 NUP35Q8NFH5 326 aa12.51□□□□□ -0.41
COL9A3-210ENST00000472880 BTF3L4Q96K17 158 aa12.51□□□□□ -0.41
COL9A3-210ENST00000472880 TMEM191AQ9H0A3 160 aa12.51□□□□□ -0.41
COL9A3-210ENST00000472880 IGKV2-24A0A0C4DH68 120 aa12.5□□□□□ -0.41
COL9A3-210ENST00000472880 PHOX2AO14813 284 aa12.5□□□□□ -0.41
COL9A3-210ENST00000472880 MAJINQ3KP22 176 aa12.5□□□□□ -0.41
COL9A3-210ENST00000472880 TMEM101Q96IK0 257 aa12.5□□□□□ -0.41
COL9A3-210ENST00000472880 NAT8BQ9UHF3 227 aa12.5□□□□□ -0.41
COL9A3-210ENST00000472880 MT1HL1P0DM35 61 aa12.49□□□□□ -0.41
COL9A3-210ENST00000472880 RIGQ13278 110 aa12.49□□□□□ -0.41
COL9A3-210ENST00000472880 OR5A1Q8NGJ0 315 aa12.49□□□□□ -0.41
COL9A3-210ENST00000472880 PRSS3P2Q8NHM4 247 aa12.49□□□□□ -0.41
COL9A3-210ENST00000472880 TRBV6-5A0A0K0K1A5 114 aa12.48□□□□□ -0.41
COL9A3-210ENST00000472880 SMIM27A0A1W2PRY6 76 aa12.48□□□□□ -0.41
COL9A3-210ENST00000472880 FOXI1Q12951 378 aa12.48□□□□□ -0.41
COL9A3-210ENST00000472880 XCL1P47992 114 aa12.47□□□□□ -0.41
COL9A3-210ENST00000472880 CLLU1Q5K131 121 aa12.47□□□□□ -0.41
COL9A3-210ENST00000472880 MRAP2Q96G30 205 aa12.47□□□□□ -0.41
COL9A3-210ENST00000472880 ST20Q9HBF5 79 aa12.47□□□□□ -0.41
COL9A3-210ENST00000472880 TMEM242Q9NWH2 141 aa12.47□□□□□ -0.41
COL9A3-210ENST00000472880 RAB4AP20338 218 aa12.46□□□□□ -0.41
COL9A3-210ENST00000472880 AMN1Q8IY45 258 aa12.46□□□□□ -0.41
COL9A3-210ENST00000472880 LINC00959A0A1B0GUT2 108 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 CCL25O15444 150 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 GAS8-AS1O95177 125 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 TSHBP01222 138 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 STPG4Q8N801 248 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 PKIGQ9Y2B9 76 aa12.45□□□□□ -0.42
COL9A3-210ENST00000472880 ESDP10768 282 aa12.44□□□□□ -0.42
COL9A3-210ENST00000472880 IFITM2Q01629 132 aa12.44□□□□□ -0.42
COL9A3-210ENST00000472880 A0A096LNI7 61 aa12.43□□□□□ -0.42
COL9A3-210ENST00000472880 IGHV1-58A0A0C4DH39 117 aa12.43□□□□□ -0.42
COL9A3-210ENST00000472880 SS18Q15532 418 aa12.43□□□□□ -0.42
COL9A3-210ENST00000472880 UBR4Q5T4S7 5183 aa12.42□□□□□ -0.42
COL9A3-210ENST00000472880 MRPL52Q86TS9 123 aaKnown RBP12.42□□□□□ -0.42
COL9A3-210ENST00000472880 CARD19Q96LW7 228 aa12.42□□□□□ -0.42
COL9A3-210ENST00000472880 LINC00474Q9P2X8 69 aa12.42□□□□□ -0.42
COL9A3-210ENST00000472880 A0A1B0GW15 77 aa12.41□□□□□ -0.42
COL9A3-210ENST00000472880 C7orf77A4D0Y5 90 aa12.41□□□□□ -0.42
COL9A3-210ENST00000472880 PRR3P79522 188 aaKnown RBP12.41□□□□□ -0.42
COL9A3-210ENST00000472880 PNRC1Q12796 327 aaPredicted RBP12.41□□□□□ -0.42
COL9A3-210ENST00000472880 LINC00526Q96FQ7 95 aa12.41□□□□□ -0.42
COL9A3-210ENST00000472880 TRBV27A0A0K0K1C4 114 aa12.4□□□□□ -0.42
COL9A3-210ENST00000472880 SMKR1H3BMG3 65 aa12.4□□□□□ -0.42
COL9A3-210ENST00000472880 CAMPP49913 170 aa12.4□□□□□ -0.42
COL9A3-210ENST00000472880 POLR2KP53803 58 aaKnown RBP12.4□□□□□ -0.42
COL9A3-210ENST00000472880 CDC42SE2Q9NRR3 84 aa12.4□□□□□ -0.42
COL9A3-210ENST00000472880 ZNF561-AS1K7EIQ3 104 aa12.39□□□□□ -0.43
COL9A3-210ENST00000472880 PPP1R2P9O14990 202 aa12.39□□□□□ -0.43
COL9A3-210ENST00000472880 FAM104BQ5XKR9 115 aa12.39□□□□□ -0.43
COL9A3-210ENST00000472880 CD164L2Q6UWJ8 174 aa12.39□□□□□ -0.43
COL9A3-210ENST00000472880 ZNF664Q8N3J9 261 aa12.39□□□□□ -0.43
COL9A3-210ENST00000472880 FCER1GP30273 86 aa12.38□□□□□ -0.43
COL9A3-210ENST00000472880 MRPL51Q4U2R6 128 aaKnown RBP12.38□□□□□ -0.43
COL9A3-210ENST00000472880 MRPL54Q6P161 138 aaKnown RBP12.38□□□□□ -0.43
COL9A3-210ENST00000472880 A0A1B0GXF2 115 aa12.37□□□□□ -0.43
COL9A3-210ENST00000472880 HBBP68871 147 aa12.37□□□□□ -0.43
COL9A3-210ENST00000472880 SYCNQ0VAF6 134 aa12.37□□□□□ -0.43
COL9A3-210ENST00000472880 NRACQ8N912 160 aa12.37□□□□□ -0.43
COL9A3-210ENST00000472880 PPP1R17O96001 155 aa12.36□□□□□ -0.43
COL9A3-210ENST00000472880 S100A8P05109 93 aa12.36□□□□□ -0.43
COL9A3-210ENST00000472880 SMAGPQ0VAQ4 97 aa12.36□□□□□ -0.43
COL9A3-210ENST00000472880 VCYO14598 125 aa12.35□□□□□ -0.43
COL9A3-210ENST00000472880 MALP21145 153 aa12.35□□□□□ -0.43
COL9A3-210ENST00000472880 UQCC3Q6UW78 93 aa12.35□□□□□ -0.43
COL9A3-210ENST00000472880 ANAPC16Q96DE5 110 aa12.35□□□□□ -0.43
COL9A3-210ENST00000472880 LINC00862A6NCI5 91 aa12.34□□□□□ -0.43
COL9A3-210ENST00000472880 F8W036 122 aa12.34□□□□□ -0.43
COL9A3-210ENST00000472880 MT-ND4LP03901 98 aa12.34□□□□□ -0.43
COL9A3-210ENST00000472880 SUMO2P61956 95 aaKnown RBP12.34□□□□□ -0.43
COL9A3-210ENST00000472880 ATP5L2Q7Z4Y8 100 aa12.34□□□□□ -0.43
COL9A3-210ENST00000472880 KIR2DL4Q99706 377 aa12.34□□□□□ -0.43
COL9A3-210ENST00000472880 C1orf196B1AJZ1 125 aa12.33□□□□□ -0.44
COL9A3-210ENST00000472880 COX7A2LO14548 114 aa12.33□□□□□ -0.44
COL9A3-210ENST00000472880 LINC01600Q96MT4 127 aa12.33□□□□□ -0.44
COL9A3-210ENST00000472880 ADCYAP1P18509 176 aa12.32□□□□□ -0.44
COL9A3-210ENST00000472880 CKS2P33552 79 aa12.32□□□□□ -0.44
COL9A3-210ENST00000472880 UBE2D4Q9Y2X8 147 aa12.32□□□□□ -0.44
COL9A3-210ENST00000472880 CSDC2Q9Y534 153 aaKnown RBP12.32□□□□□ -0.44
COL9A3-210ENST00000472880 IGLV4-69A0A075B6H9 119 aa12.31□□□□□ -0.44
COL9A3-210ENST00000472880 LOC107984640A0A0U1RRK4 108 aa12.31□□□□□ -0.44
COL9A3-210ENST00000472880 TMEM218A2RU14 115 aa12.31□□□□□ -0.44
COL9A3-210ENST00000472880 PTTG1IPP53801 180 aa12.31□□□□□ -0.44
COL9A3-210ENST00000472880 RNASE13Q5GAN3 156 aaKnown RBP12.31□□□□□ -0.44
COL9A3-210ENST00000472880 TRBV24-1A0A075B6N3 115 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 D6R8Y8 96 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 GAGE2BQ13066 116 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 REG3GQ6UW15 175 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 SPINK6Q6UWN8 80 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 Q6ZRP5 223 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 C20orf78Q9BR46 151 aa12.3□□□□□ -0.44
COL9A3-210ENST00000472880 TRAV13-1A0A0B4J241 112 aa12.29□□□□□ -0.44
COL9A3-210ENST00000472880 TNFRSF6BO95407 300 aa12.29□□□□□ -0.44
COL9A3-210ENST00000472880 TMEM18Q96B42 140 aa12.29□□□□□ -0.44
COL9A3-210ENST00000472880 CAMK2N2Q96S95 79 aa12.29□□□□□ -0.44
COL9A3-210ENST00000472880 RPL32P62910 135 aaKnown RBP12.28□□□□□ -0.44
COL9A3-210ENST00000472880 Q6ZUT4 128 aa12.28□□□□□ -0.44
COL9A3-210ENST00000472880 COMMD7Q86VX2 200 aa12.28□□□□□ -0.44
COL9A3-210ENST00000472880 TNXBP22105 4242 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms