RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 PRELID3AQ96N28 172 aa3.31□□□□□ -1.88
SF3B1-208ENST00000470268 AP1S3Q96PC3 154 aa3.31□□□□□ -1.88
SF3B1-208ENST00000470268 TMEM191AQ9H0A3 160 aa3.31□□□□□ -1.88
SF3B1-208ENST00000470268 UQCR10Q9UDW1 63 aa3.31□□□□□ -1.88
SF3B1-208ENST00000470268 LAMTOR2Q9Y2Q5 125 aa3.31□□□□□ -1.88
SF3B1-208ENST00000470268 P0DMU3 169 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 FAM231AP0DMU4 169 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 FAM231CP0DMU5 169 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 CKS2P33552 79 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 HNRNPA3P51991 378 aaKnown RBP3.3□□□□□ -1.88
SF3B1-208ENST00000470268 Q6ZN92 141 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 SLC25A29Q8N8R3 303 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 DPH3P1Q9H4G8 78 aa3.3□□□□□ -1.88
SF3B1-208ENST00000470268 LOC100131303A0A0U1RQF7 123 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 ATP5G1P05496 136 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 MGPP08493 103 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 IGLC3P0DOY3 106 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 HTN3P15516 51 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 HINT1P49773 126 aaPredicted RBP3.29□□□□□ -1.88
SF3B1-208ENST00000470268 SEC61GP60059 68 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 VAMP3Q15836 100 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 SPATA45Q537H7 98 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 OCIAD2Q56VL3 154 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 ZFP2Q6ZN57 461 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 NEGR1Q7Z3B1 354 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 ORMDL3Q8N138 153 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 RPL39LQ96EH5 51 aaKnown RBP3.29□□□□□ -1.88
SF3B1-208ENST00000470268 VSIG2Q96IQ7 327 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 CST9LQ9H4G1 147 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 STAB2Q8WWQ8 2551 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 CSMD3Q7Z407 3707 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 TRGV4A0A0C4DH28 118 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 TEX48A0A1B0GUV7 120 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 F5H768 121 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 M0QY20 66 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 SMIM17P0DL12 118 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 TCTAP57738 103 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 SEC61BP60468 96 aaKnown RBP3.29□□□□□ -1.88
SF3B1-208ENST00000470268 ZNF56Q15929 161 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 HHLA3Q9XRX5 114 aa3.29□□□□□ -1.88
SF3B1-208ENST00000470268 STARD9Q9P2P6 4700 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 NACAE9PAV3 2078 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 TRAV26-1A0A087WT03 109 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 DEFB131BA0A096LNP1 70 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 A0A0J9YY99 117 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 M0QXV9 152 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 SIVA1O15304 175 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 CRYBA4P53673 196 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 PRO0255Q9UI72 69 aa3.28□□□□□ -1.88
SF3B1-208ENST00000470268 MRPS16Q9Y3D3 137 aaKnown RBP3.28□□□□□ -1.88
SF3B1-208ENST00000470268 TRBV6-4A0A1B0GX49 114 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 hDV102S1A0JD36 115 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 K7EQD1 137 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 LEPROTL1O95214 131 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 SCGB1A1P11684 91 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 FA2HQ7L5A8 372 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 PHLDA1Q8WV24 401 aaPredicted RBP3.27□□□□□ -1.89
SF3B1-208ENST00000470268 CHCHD1Q96BP2 118 aaKnown RBP3.27□□□□□ -1.89
SF3B1-208ENST00000470268 DNAH7Q8WXX0 4024 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 TGP01266 2768 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 IGLV2-18A0A075B6J9 118 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 TRAV10A0A0B4J240 114 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 SYS1-DBNDD2H3BUS1 97 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 K7ERU9 68 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 LINC00694P0DN24 101 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 MRAP2Q96G30 205 aa3.27□□□□□ -1.89
SF3B1-208ENST00000470268 A0A096LPF7 62 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 GAGE5Q13069 117 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 RHOHQ15669 191 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 ZNRF2Q8NHG8 242 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 TMEM70Q9BUB7 260 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 PLECQ15149 4684 aaKnown RBP3.26□□□□□ -1.89
SF3B1-208ENST00000470268 DYNC2H1Q8NCM8 4307 aaKnown RBP3.26□□□□□ -1.89
SF3B1-208ENST00000470268 LYSTQ99698 3801 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 TRBV7-3A0A075B6L6 115 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 IGLV5-52A0A0A0MRZ9 124 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 IGHV3-38A0A0C4DH36 116 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 TRBV10-1A0A0K0K1A3 114 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 TRBV6-5A0A0K0K1A5 114 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 SDHAF1A6NFY7 115 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 IGLL5B9A064 214 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 POLR2KP53803 58 aaKnown RBP3.26□□□□□ -1.89
SF3B1-208ENST00000470268 UBE2D3P61077 147 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 UBE2D2P62837 147 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 PAPPA-AS1Q5QFB9 102 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 ZFAND6Q6FIF0 208 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 CEMP1Q6PRD7 247 aaPredicted RBP3.26□□□□□ -1.89
SF3B1-208ENST00000470268 MAP1LC3AQ9H492 121 aa3.26□□□□□ -1.89
SF3B1-208ENST00000470268 H3BNG1 76 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 H7C1H1 209 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 TAX1BP3O14907 124 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 RPL36AP83881 106 aaKnown RBP3.25□□□□□ -1.89
SF3B1-208ENST00000470268 LCE1AQ5T7P2 110 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 ZC2HC1BQ5TFG8 222 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 AMMECR1LQ6DCA0 310 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 NTM-AS1Q6ZSK4 140 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 MTURNQ8N3F0 131 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 MUC7Q8TAX7 377 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 PRADC1Q9BSG0 188 aa3.25□□□□□ -1.89
SF3B1-208ENST00000470268 TRBV27A0A0K0K1C4 114 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms