RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 CT83Q5H943 113 aa13.19□□□□□ -0.3
COL9A3-207ENST00000467819 BLOC1S1P78537 153 aa13.18□□□□□ -0.3
COL9A3-207ENST00000467819 CARD19Q96LW7 228 aa13.18□□□□□ -0.3
COL9A3-207ENST00000467819 SS18Q15532 418 aa13.17□□□□□ -0.3
COL9A3-207ENST00000467819 A0A1B0GUT8 65 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 HIGD1CA8MV81 97 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 TMEM191AQ9H0A3 160 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 CDC42SE2Q9NRR3 84 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 LINC00474Q9P2X8 69 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 PKIGQ9Y2B9 76 aa13.16□□□□□ -0.3
COL9A3-207ENST00000467819 POLR2KP53803 58 aaKnown RBP13.15□□□□□ -0.3
COL9A3-207ENST00000467819 MRPL52Q86TS9 123 aaKnown RBP13.15□□□□□ -0.3
COL9A3-207ENST00000467819 TSKUQ8WUA8 353 aa13.15□□□□□ -0.3
COL9A3-207ENST00000467819 LINC01600Q96MT4 127 aa13.15□□□□□ -0.3
COL9A3-207ENST00000467819 SMIM7Q9BQ49 75 aa13.15□□□□□ -0.3
COL9A3-207ENST00000467819 C7orf77A4D0Y5 90 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 ZNF561-AS1K7EIQ3 104 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 SYCNQ0VAF6 134 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 CD164L2Q6UWJ8 174 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 AMN1Q8IY45 258 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 ZNF664Q8N3J9 261 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 LRP2P98164 4655 aa13.14□□□□□ -0.31
COL9A3-207ENST00000467819 RAB4AP20338 218 aa13.13□□□□□ -0.31
COL9A3-207ENST00000467819 ODF1Q14990 250 aa13.13□□□□□ -0.31
COL9A3-207ENST00000467819 LINC01551Q86U37 167 aa13.13□□□□□ -0.31
COL9A3-207ENST00000467819 EIF5A2Q9GZV4 153 aaKnown RBP13.13□□□□□ -0.31
COL9A3-207ENST00000467819 TRBV27A0A0K0K1C4 114 aa13.12□□□□□ -0.31
COL9A3-207ENST00000467819 SMKR1H3BMG3 65 aa13.12□□□□□ -0.31
COL9A3-207ENST00000467819 FAM210AQ96ND0 272 aa13.12□□□□□ -0.31
COL9A3-207ENST00000467819 CAMPP49913 170 aa13.11□□□□□ -0.31
COL9A3-207ENST00000467819 AKAP14Q86UN6 197 aa13.11□□□□□ -0.31
COL9A3-207ENST00000467819 ZNF727A8MUV8 499 aa13.1□□□□□ -0.31
COL9A3-207ENST00000467819 FCER1GP30273 86 aa13.1□□□□□ -0.31
COL9A3-207ENST00000467819 OSTCQ9NRP0 149 aa13.1□□□□□ -0.31
COL9A3-207ENST00000467819 MALP21145 153 aa13.09□□□□□ -0.31
COL9A3-207ENST00000467819 RNASE13Q5GAN3 156 aaKnown RBP13.09□□□□□ -0.31
COL9A3-207ENST00000467819 SPINK6Q6UWN8 80 aa13.09□□□□□ -0.31
COL9A3-207ENST00000467819 IGLV4-69A0A075B6H9 119 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 A0A0J9YXV3 536 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 VCYO14598 125 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 PTTG1IPP53801 180 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 GAGE2BQ13066 116 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 ISOC2Q96AB3 205 aa13.08□□□□□ -0.32
COL9A3-207ENST00000467819 hCG_2014768A0A024R1R8 64 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 LOC107984640A0A0U1RRK4 108 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 C1orf196B1AJZ1 125 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 COX7A2LO14548 114 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 RIGQ13278 110 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 REG3GQ6UW15 175 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 Q6ZRP5 223 aa13.07□□□□□ -0.32
COL9A3-207ENST00000467819 NRACQ8N912 160 aa13.06□□□□□ -0.32
COL9A3-207ENST00000467819 NUP35Q8NFH5 326 aa13.06□□□□□ -0.32
COL9A3-207ENST00000467819 UBE2D4Q9Y2X8 147 aa13.06□□□□□ -0.32
COL9A3-207ENST00000467819 V9GYV3 84 aa13.06□□□□□ -0.32
COL9A3-207ENST00000467819 TRAV13-1A0A0B4J241 112 aa13.05□□□□□ -0.32
COL9A3-207ENST00000467819 SRP19P09132 144 aaKnown RBP13.05□□□□□ -0.32
COL9A3-207ENST00000467819 SUMO2P61956 95 aaKnown RBP13.05□□□□□ -0.32
COL9A3-207ENST00000467819 CAMK2N2Q96S95 79 aa13.05□□□□□ -0.32
COL9A3-207ENST00000467819 SMAGPQ0VAQ4 97 aa13.04□□□□□ -0.32
COL9A3-207ENST00000467819 Q6ZUT4 128 aa13.04□□□□□ -0.32
COL9A3-207ENST00000467819 KIR2DL4Q99706 377 aa13.04□□□□□ -0.32
COL9A3-207ENST00000467819 CSDC2Q9Y534 153 aaKnown RBP13.04□□□□□ -0.32
COL9A3-207ENST00000467819 PPP1R17O96001 155 aa13.03□□□□□ -0.32
COL9A3-207ENST00000467819 KRTAP10-8P60410 259 aa13.03□□□□□ -0.32
COL9A3-207ENST00000467819 SRSF9Q13242 221 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL9A3-207ENST00000467819 C5orf38Q86SI9 138 aa13.03□□□□□ -0.32
COL9A3-207ENST00000467819 A0A1W2PNN7 141 aa13.02□□□□□ -0.33
COL9A3-207ENST00000467819 PPP1R2P9O14990 202 aa13.01□□□□□ -0.33
COL9A3-207ENST00000467819 APOMO95445 188 aa13.01□□□□□ -0.33
COL9A3-207ENST00000467819 MRPL51Q4U2R6 128 aaKnown RBP13.01□□□□□ -0.33
COL9A3-207ENST00000467819 NAT8BQ9UHF3 227 aa13.01□□□□□ -0.33
COL9A3-207ENST00000467819 RPL18AQ02543 176 aaKnown RBP13□□□□□ -0.33
COL9A3-207ENST00000467819 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-207ENST00000467819 SPAG11BQ08648 103 aa12.99□□□□□ -0.33
COL9A3-207ENST00000467819 TMEM241Q24JQ0 296 aa12.99□□□□□ -0.33
COL9A3-207ENST00000467819 FAM104BQ5XKR9 115 aa12.99□□□□□ -0.33
COL9A3-207ENST00000467819 TMEM18Q96B42 140 aa12.99□□□□□ -0.33
COL9A3-207ENST00000467819 C2orf48Q96LS8 159 aa12.99□□□□□ -0.33
COL9A3-207ENST00000467819 RNF213Q63HN8 5207 aa12.98□□□□□ -0.33
COL9A3-207ENST00000467819 RPL23P62829 140 aaKnown RBP12.98□□□□□ -0.33
COL9A3-207ENST00000467819 ADIRFQ15847 76 aa12.98□□□□□ -0.33
COL9A3-207ENST00000467819 C9orf116Q5BN46 136 aaPredicted RBP12.98□□□□□ -0.33
COL9A3-207ENST00000467819 OPRPNQ99935 248 aaPredicted RBP12.98□□□□□ -0.33
COL9A3-207ENST00000467819 TIMM21Q9BVV7 248 aa12.98□□□□□ -0.33
COL9A3-207ENST00000467819 MT-ND6P03923 174 aa12.96□□□□□ -0.33
COL9A3-207ENST00000467819 RPL39P62891 51 aaKnown RBP12.96□□□□□ -0.33
COL9A3-207ENST00000467819 FAM74A3Q4VXF1 159 aa12.96□□□□□ -0.33
COL9A3-207ENST00000467819 PSORS1C2Q9UIG4 136 aa12.96□□□□□ -0.33
COL9A3-207ENST00000467819 CKS2P33552 79 aa12.95□□□□□ -0.34
COL9A3-207ENST00000467819 PHF5AQ7RTV0 110 aaKnown RBP12.95□□□□□ -0.34
COL9A3-207ENST00000467819 C20orf78Q9BR46 151 aa12.95□□□□□ -0.34
COL9A3-207ENST00000467819 LINC00862A6NCI5 91 aa12.94□□□□□ -0.34
COL9A3-207ENST00000467819 SMIM27A0A1W2PRY6 76 aa12.93□□□□□ -0.34
COL9A3-207ENST00000467819 OR10D4PQ8NGN7 298 aa12.93□□□□□ -0.34
COL9A3-207ENST00000467819 ORAOV1Q8WV07 137 aa12.93□□□□□ -0.34
COL9A3-207ENST00000467819 NAT8Q9UHE5 227 aa12.93□□□□□ -0.34
COL9A3-207ENST00000467819 TRBV24-1A0A075B6N3 115 aa12.92□□□□□ -0.34
COL9A3-207ENST00000467819 C9JQL5 133 aa12.92□□□□□ -0.34
COL9A3-207ENST00000467819 TNFRSF6BO95407 300 aa12.92□□□□□ -0.34
COL9A3-207ENST00000467819 RPL32P62910 135 aaKnown RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms