RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 COMMD7Q86VX2 200 aa12.28□□□□□ -0.44
COL9A3-203ENST00000462700 PPBPP02775 128 aa12.27□□□□□ -0.45
COL9A3-203ENST00000462700 Q6ZSA8 131 aa12.27□□□□□ -0.45
COL9A3-203ENST00000462700 OR5A1Q8NGJ0 315 aa12.27□□□□□ -0.45
COL9A3-203ENST00000462700 PHOX2AO14813 284 aa12.26□□□□□ -0.45
COL9A3-203ENST00000462700 NPYP01303 97 aa12.26□□□□□ -0.45
COL9A3-203ENST00000462700 SEC11CQ9BY50 192 aa12.26□□□□□ -0.45
COL9A3-203ENST00000462700 FAT1Q14517 4588 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 GAGE12HA6NDE8 117 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 ORMDL3Q8N138 153 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 CLRN3Q8NCR9 226 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 CHCHD10Q8WYQ3 142 aaPredicted RBP12.25□□□□□ -0.45
COL9A3-203ENST00000462700 SMIM2Q9BVW6 85 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 CDC42SE2Q9NRR3 84 aa12.25□□□□□ -0.45
COL9A3-203ENST00000462700 DGAT2L7PQ6IED9 249 aa12.24□□□□□ -0.45
COL9A3-203ENST00000462700 TCAPO15273 167 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 TMEM136Q6ZRR5 245 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 ZNF664Q8N3J9 261 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 PRELID3AQ96N28 172 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 IMMP2LQ96T52 175 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 CTDSP1Q9GZU7 261 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 UBE2D4Q9Y2X8 147 aa12.23□□□□□ -0.45
COL9A3-203ENST00000462700 LINC00959A0A1B0GUT2 108 aa12.22□□□□□ -0.45
COL9A3-203ENST00000462700 SMAGPQ0VAQ4 97 aa12.22□□□□□ -0.45
COL9A3-203ENST00000462700 CSDC2Q9Y534 153 aaKnown RBP12.22□□□□□ -0.45
COL9A3-203ENST00000462700 hDV102S1A0JD36 115 aa12.21□□□□□ -0.45
COL9A3-203ENST00000462700 EPM2AB3EWF7 344 aa12.21□□□□□ -0.45
COL9A3-203ENST00000462700 SMR3BP02814 79 aaPredicted RBP12.21□□□□□ -0.45
COL9A3-203ENST00000462700 TMEM18Q96B42 140 aa12.21□□□□□ -0.45
COL9A3-203ENST00000462700 FOXI1Q12951 378 aa12.2□□□□□ -0.46
COL9A3-203ENST00000462700 C15orf56Q8N910 161 aa12.2□□□□□ -0.46
COL9A3-203ENST00000462700 C9orf163Q8N9P6 203 aa12.2□□□□□ -0.46
COL9A3-203ENST00000462700 CCL25O15444 150 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 XCL1P47992 114 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 CNBPP62633 177 aaKnown RBP12.19□□□□□ -0.46
COL9A3-203ENST00000462700 Q5VSD8 79 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 CFAP161Q6P656 301 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 TIMM21Q9BVV7 248 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 LAMTOR2Q9Y2Q5 125 aa12.19□□□□□ -0.46
COL9A3-203ENST00000462700 RPL39P62891 51 aaKnown RBP12.18□□□□□ -0.46
COL9A3-203ENST00000462700 SS18Q15532 418 aa12.18□□□□□ -0.46
COL9A3-203ENST00000462700 C10orf91Q5T1B1 145 aa12.18□□□□□ -0.46
COL9A3-203ENST00000462700 PRSS47A8MTI9 375 aa12.17□□□□□ -0.46
COL9A3-203ENST00000462700 RNASE13Q5GAN3 156 aaKnown RBP12.17□□□□□ -0.46
COL9A3-203ENST00000462700 Q6ZUT4 128 aa12.17□□□□□ -0.46
COL9A3-203ENST00000462700 SCXQ7RTU7 201 aa12.17□□□□□ -0.46
COL9A3-203ENST00000462700 AP5S1Q9NUS5 200 aa12.17□□□□□ -0.46
COL9A3-203ENST00000462700 TRAV9-1A0A075B6T8 112 aa12.16□□□□□ -0.46
COL9A3-203ENST00000462700 SLPIP03973 132 aa12.16□□□□□ -0.46
COL9A3-203ENST00000462700 CHAC1Q9BUX1 264 aa12.16□□□□□ -0.46
COL9A3-203ENST00000462700 MAP1LC3AQ9H492 121 aa12.16□□□□□ -0.46
COL9A3-203ENST00000462700 CARHSP1Q9Y2V2 147 aaKnown RBP12.16□□□□□ -0.46
COL9A3-203ENST00000462700 RAB5AP20339 215 aa12.15□□□□□ -0.46
COL9A3-203ENST00000462700 HIGD2BQ4VC39 106 aa12.15□□□□□ -0.46
COL9A3-203ENST00000462700 CD164L2Q6UWJ8 174 aa12.15□□□□□ -0.46
COL9A3-203ENST00000462700 GVQW2A0A096LPI5 108 aaPredicted RBP12.14□□□□□ -0.47
COL9A3-203ENST00000462700 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.14□□□□□ -0.47
COL9A3-203ENST00000462700 LOC389332A0A1B0GUA5 103 aa12.14□□□□□ -0.47
COL9A3-203ENST00000462700 FAM229AH3BQW9 127 aa12.14□□□□□ -0.47
COL9A3-203ENST00000462700 S100PP25815 95 aa12.14□□□□□ -0.47
COL9A3-203ENST00000462700 SPANXA1Q9NS26 97 aa12.14□□□□□ -0.47
COL9A3-203ENST00000462700 C1orf196B1AJZ1 125 aa12.13□□□□□ -0.47
COL9A3-203ENST00000462700 RHEBQ15382 184 aa12.13□□□□□ -0.47
COL9A3-203ENST00000462700 FAM104AQ969W3 186 aa12.13□□□□□ -0.47
COL9A3-203ENST00000462700 TRAV13-1A0A0B4J241 112 aa12.12□□□□□ -0.47
COL9A3-203ENST00000462700 SDIM1Q6ZPB5 146 aa12.12□□□□□ -0.47
COL9A3-203ENST00000462700 Q8N8P6 123 aa12.12□□□□□ -0.47
COL9A3-203ENST00000462700 CIRBP-AS1Q8TBR5 109 aa12.12□□□□□ -0.47
COL9A3-203ENST00000462700 IGHV1-58A0A0C4DH39 117 aa12.11□□□□□ -0.47
COL9A3-203ENST00000462700 MRPS36P82909 103 aaKnown RBP12.11□□□□□ -0.47
COL9A3-203ENST00000462700 OPRPNQ99935 248 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-203ENST00000462700 RPS10P5Q9NQ39 176 aa12.11□□□□□ -0.47
COL9A3-203ENST00000462700 VPS13BQ7Z7G8 4022 aa12.1□□□□□ -0.47
COL9A3-203ENST00000462700 IGHV3-64A0A075B6Q5 118 aa12.1□□□□□ -0.47
COL9A3-203ENST00000462700 IFI27P40305 119 aaPredicted RBP12.09□□□□□ -0.47
COL9A3-203ENST00000462700 KIAA1644Q3SXP7 199 aa12.09□□□□□ -0.47
COL9A3-203ENST00000462700 LINC00528Q8N1L1 170 aa12.09□□□□□ -0.47
COL9A3-203ENST00000462700 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.09□□□□□ -0.47
COL9A3-203ENST00000462700 PANO1I0J062 215 aa12.08□□□□□ -0.48
COL9A3-203ENST00000462700 GNB1LQ9BYB4 327 aa12.08□□□□□ -0.48
COL9A3-203ENST00000462700 PYGO1Q9Y3Y4 419 aa12.08□□□□□ -0.48
COL9A3-203ENST00000462700 K7EMI3 77 aa12.07□□□□□ -0.48
COL9A3-203ENST00000462700 COX7A2LO14548 114 aa12.07□□□□□ -0.48
COL9A3-203ENST00000462700 ORMDL2Q53FV1 153 aa12.07□□□□□ -0.48
COL9A3-203ENST00000462700 NXT2Q9NPJ8 142 aaKnown RBP12.07□□□□□ -0.48
COL9A3-203ENST00000462700 IGLV4-3A0A075B6K6 122 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 IFITM10A6NMD0 228 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 INAFM2P0DMQ5 153 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 MALP21145 153 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 COX19Q49B96 90 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 LINC00526Q96FQ7 95 aa12.06□□□□□ -0.48
COL9A3-203ENST00000462700 APOC3P02656 99 aa12.05□□□□□ -0.48
COL9A3-203ENST00000462700 CIRBPQ14011 172 aaKnown RBP12.05□□□□□ -0.48
COL9A3-203ENST00000462700 C2orf66Q6UXQ4 117 aa12.05□□□□□ -0.48
COL9A3-203ENST00000462700 C5orf38Q86SI9 138 aa12.05□□□□□ -0.48
COL9A3-203ENST00000462700 CYSLTR1Q9Y271 337 aa12.05□□□□□ -0.48
COL9A3-203ENST00000462700 ZNF561-AS1K7EIQ3 104 aa12.04□□□□□ -0.48
COL9A3-203ENST00000462700 MT-ND6P03923 174 aa12.03□□□□□ -0.48
COL9A3-203ENST00000462700 PLA2G1BP04054 148 aaKnown RBP12.03□□□□□ -0.48
COL9A3-203ENST00000462700 NDUFA5Q16718 116 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms