RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RNASEKQ6P5S7 137 aaKnown RBP12.03□□□□□ -0.48
HOXD3-204ENST00000459979 UQCC3Q6UW78 93 aa12.03□□□□□ -0.48
HOXD3-204ENST00000459979 CKS2P33552 79 aa12.02□□□□□ -0.49
HOXD3-204ENST00000459979 BTF3L4Q96K17 158 aa12.02□□□□□ -0.49
HOXD3-204ENST00000459979 C7orf77A4D0Y5 90 aa12.01□□□□□ -0.49
HOXD3-204ENST00000459979 PPBPP02775 128 aa12.01□□□□□ -0.49
HOXD3-204ENST00000459979 OR5A1Q8NGJ0 315 aa12.01□□□□□ -0.49
HOXD3-204ENST00000459979 TMEM101Q96IK0 257 aa12.01□□□□□ -0.49
HOXD3-204ENST00000459979 KIR2DL4Q99706 377 aa12.01□□□□□ -0.49
HOXD3-204ENST00000459979 PHOX2AO14813 284 aa12□□□□□ -0.49
HOXD3-204ENST00000459979 LINC01620Q4KN68 170 aa12□□□□□ -0.49
HOXD3-204ENST00000459979 CSDC2Q9Y534 153 aaKnown RBP12□□□□□ -0.49
HOXD3-204ENST00000459979 TNFRSF6BO95407 300 aa11.99□□□□□ -0.49
HOXD3-204ENST00000459979 FCER1GP30273 86 aa11.99□□□□□ -0.49
HOXD3-204ENST00000459979 C9orf163Q8N9P6 203 aa11.99□□□□□ -0.49
HOXD3-204ENST00000459979 CDC42SE2Q9NRR3 84 aa11.99□□□□□ -0.49
HOXD3-204ENST00000459979 TMEM218A2RU14 115 aa11.98□□□□□ -0.49
HOXD3-204ENST00000459979 D6R8Y8 96 aa11.98□□□□□ -0.49
HOXD3-204ENST00000459979 TCAPO15273 167 aa11.98□□□□□ -0.49
HOXD3-204ENST00000459979 CNBPP62633 177 aaKnown RBP11.98□□□□□ -0.49
HOXD3-204ENST00000459979 CHCHD10Q8WYQ3 142 aaPredicted RBP11.98□□□□□ -0.49
HOXD3-204ENST00000459979 IGKV3OR2-268A0A0C4DH90 116 aa11.97□□□□□ -0.49
HOXD3-204ENST00000459979 GAGE12HA6NDE8 117 aa11.97□□□□□ -0.49
HOXD3-204ENST00000459979 ADCYAP1P18509 176 aa11.97□□□□□ -0.49
HOXD3-204ENST00000459979 SMAGPQ0VAQ4 97 aa11.97□□□□□ -0.49
HOXD3-204ENST00000459979 CFAP161Q6P656 301 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 LINC00528Q8N1L1 170 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 ZNF664Q8N3J9 261 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 IMMP2LQ96T52 175 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 TIMM21Q9BVV7 248 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 SMIM2Q9BVW6 85 aa11.96□□□□□ -0.49
HOXD3-204ENST00000459979 LINC00959A0A1B0GUT2 108 aa11.95□□□□□ -0.5
HOXD3-204ENST00000459979 NPYP01303 97 aa11.95□□□□□ -0.5
HOXD3-204ENST00000459979 ORMDL3Q8N138 153 aa11.95□□□□□ -0.5
HOXD3-204ENST00000459979 CHAC1Q9BUX1 264 aa11.95□□□□□ -0.5
HOXD3-204ENST00000459979 UBE2D4Q9Y2X8 147 aa11.95□□□□□ -0.5
HOXD3-204ENST00000459979 hDV102S1A0JD36 115 aa11.94□□□□□ -0.5
HOXD3-204ENST00000459979 PLA2G1BP04054 148 aaKnown RBP11.94□□□□□ -0.5
HOXD3-204ENST00000459979 TMEM136Q6ZRR5 245 aa11.94□□□□□ -0.5
HOXD3-204ENST00000459979 C15orf56Q8N910 161 aa11.94□□□□□ -0.5
HOXD3-204ENST00000459979 TMEM18Q96B42 140 aa11.94□□□□□ -0.5
HOXD3-204ENST00000459979 PRSS47A8MTI9 375 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 CCL25O15444 150 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 FOXI1Q12951 378 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 SCXQ7RTU7 201 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 SEC11CQ9BY50 192 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 CTDSP1Q9GZU7 261 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 AP5S1Q9NUS5 200 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 LAMTOR2Q9Y2Q5 125 aa11.93□□□□□ -0.5
HOXD3-204ENST00000459979 SLPIP03973 132 aa11.92□□□□□ -0.5
HOXD3-204ENST00000459979 SS18Q15532 418 aa11.92□□□□□ -0.5
HOXD3-204ENST00000459979 SDIM1Q6ZPB5 146 aa11.92□□□□□ -0.5
HOXD3-204ENST00000459979 PRELID3AQ96N28 172 aa11.92□□□□□ -0.5
HOXD3-204ENST00000459979 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.9□□□□□ -0.5
HOXD3-204ENST00000459979 KRTAP29-1A8MX34 341 aaPredicted RBP11.9□□□□□ -0.5
HOXD3-204ENST00000459979 XCL1P47992 114 aa11.9□□□□□ -0.5
HOXD3-204ENST00000459979 CD164L2Q6UWJ8 174 aa11.9□□□□□ -0.5
HOXD3-204ENST00000459979 CIRBP-AS1Q8TBR5 109 aa11.9□□□□□ -0.5
HOXD3-204ENST00000459979 KRTAP3-3Q9BYR6 98 aa11.9□□□□□ -0.5
HOXD3-204ENST00000459979 KRTAP3-2Q9BYR7 98 aa11.9□□□□□ -0.5
HOXD3-204ENST00000459979 TRAV9-1A0A075B6T8 112 aa11.89□□□□□ -0.51
HOXD3-204ENST00000459979 GVQW2A0A096LPI5 108 aaPredicted RBP11.89□□□□□ -0.51
HOXD3-204ENST00000459979 C1orf196B1AJZ1 125 aa11.89□□□□□ -0.51
HOXD3-204ENST00000459979 C10orf91Q5T1B1 145 aa11.89□□□□□ -0.51
HOXD3-204ENST00000459979 COMMD7Q86VX2 200 aa11.89□□□□□ -0.51
HOXD3-204ENST00000459979 SPANXA1Q9NS26 97 aa11.88□□□□□ -0.51
HOXD3-204ENST00000459979 FAM104AQ969W3 186 aa11.87□□□□□ -0.51
HOXD3-204ENST00000459979 IGHV3-64A0A075B6Q5 118 aa11.86□□□□□ -0.51
HOXD3-204ENST00000459979 IGHV1-58A0A0C4DH39 117 aa11.86□□□□□ -0.51
HOXD3-204ENST00000459979 RAB5AP20339 215 aa11.86□□□□□ -0.51
HOXD3-204ENST00000459979 RPL39P62891 51 aaKnown RBP11.86□□□□□ -0.51
HOXD3-204ENST00000459979 MRPS36P82909 103 aaKnown RBP11.86□□□□□ -0.51
HOXD3-204ENST00000459979 CIRBPQ14011 172 aaKnown RBP11.86□□□□□ -0.51
HOXD3-204ENST00000459979 Q6ZUT4 128 aa11.86□□□□□ -0.51
HOXD3-204ENST00000459979 MAP1LC3AQ9H492 121 aa11.85□□□□□ -0.51
HOXD3-204ENST00000459979 HIGD2BQ4VC39 106 aa11.84□□□□□ -0.51
HOXD3-204ENST00000459979 CARHSP1Q9Y2V2 147 aaKnown RBP11.84□□□□□ -0.51
HOXD3-204ENST00000459979 PYGO1Q9Y3Y4 419 aa11.84□□□□□ -0.51
HOXD3-204ENST00000459979 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.84□□□□□ -0.51
HOXD3-204ENST00000459979 KRTAP10-4P60372 401 aaPredicted RBP11.83□□□□□ -0.52
HOXD3-204ENST00000459979 RNASE13Q5GAN3 156 aaKnown RBP11.83□□□□□ -0.52
HOXD3-204ENST00000459979 Q8N8P6 123 aa11.83□□□□□ -0.52
HOXD3-204ENST00000459979 TRAV13-1A0A0B4J241 112 aa11.82□□□□□ -0.52
HOXD3-204ENST00000459979 PANO1I0J062 215 aa11.82□□□□□ -0.52
HOXD3-204ENST00000459979 K7EMI3 77 aa11.82□□□□□ -0.52
HOXD3-204ENST00000459979 LRP1Q07954 4544 aaKnown RBP11.81□□□□□ -0.52
HOXD3-204ENST00000459979 LOC389332A0A1B0GUA5 103 aa11.81□□□□□ -0.52
HOXD3-204ENST00000459979 COX7A2LO14548 114 aa11.81□□□□□ -0.52
HOXD3-204ENST00000459979 S100PP25815 95 aa11.81□□□□□ -0.52
HOXD3-204ENST00000459979 IFI27P40305 119 aaPredicted RBP11.8□□□□□ -0.52
HOXD3-204ENST00000459979 RHEBQ15382 184 aa11.8□□□□□ -0.52
HOXD3-204ENST00000459979 OPRPNQ99935 248 aaPredicted RBP11.79□□□□□ -0.52
HOXD3-204ENST00000459979 GNB1LQ9BYB4 327 aa11.79□□□□□ -0.52
HOXD3-204ENST00000459979 NXT2Q9NPJ8 142 aaKnown RBP11.79□□□□□ -0.52
HOXD3-204ENST00000459979 ZNF561-AS1K7EIQ3 104 aa11.78□□□□□ -0.52
HOXD3-204ENST00000459979 COX19Q49B96 90 aa11.78□□□□□ -0.52
HOXD3-204ENST00000459979 ORMDL2Q53FV1 153 aa11.78□□□□□ -0.52
HOXD3-204ENST00000459979 SPACA4Q8TDM5 124 aa11.78□□□□□ -0.52
HOXD3-204ENST00000459979 IGHV3OR16-9A0A0B4J2B5 98 aa11.77□□□□□ -0.53
HOXD3-204ENST00000459979 MALP21145 153 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms