RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TCAPO15273 167 aa11.31□□□□□ -0.6
USP39-208ENST00000455732 OR5A1Q8NGJ0 315 aa11.31□□□□□ -0.6
USP39-208ENST00000455732 CTDSP1Q9GZU7 261 aa11.31□□□□□ -0.6
USP39-208ENST00000455732 VPS13BQ7Z7G8 4022 aa11.31□□□□□ -0.6
USP39-208ENST00000455732 NPYP01303 97 aa11.3□□□□□ -0.6
USP39-208ENST00000455732 Q6ZSA8 131 aa11.3□□□□□ -0.6
USP39-208ENST00000455732 ORMDL3Q8N138 153 aa11.3□□□□□ -0.6
USP39-208ENST00000455732 SMIM2Q9BVW6 85 aa11.3□□□□□ -0.6
USP39-208ENST00000455732 PRSS1P07477 247 aa11.29□□□□□ -0.6
USP39-208ENST00000455732 HAMPP81172 84 aa11.29□□□□□ -0.6
USP39-208ENST00000455732 SMAGPQ0VAQ4 97 aa11.29□□□□□ -0.6
USP39-208ENST00000455732 CLRN3Q8NCR9 226 aa11.29□□□□□ -0.6
USP39-208ENST00000455732 CSDC2Q9Y534 153 aaKnown RBP11.29□□□□□ -0.6
USP39-208ENST00000455732 SRRM2Q9UQ35 2752 aaKnown RBP11.28□□□□□ -0.6
USP39-208ENST00000455732 C10orf91Q5T1B1 145 aa11.28□□□□□ -0.6
USP39-208ENST00000455732 TMEM136Q6ZRR5 245 aa11.28□□□□□ -0.6
USP39-208ENST00000455732 CDC42SE2Q9NRR3 84 aa11.28□□□□□ -0.6
USP39-208ENST00000455732 LAMTOR2Q9Y2Q5 125 aa11.28□□□□□ -0.6
USP39-208ENST00000455732 TRAV9-1A0A075B6T8 112 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 IGKV3OR2-268A0A0C4DH90 116 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 SMR3BP02814 79 aaPredicted RBP11.27□□□□□ -0.61
USP39-208ENST00000455732 Q5VSD8 79 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 DGAT2L7PQ6IED9 249 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 CHCHD10Q8WYQ3 142 aaPredicted RBP11.27□□□□□ -0.61
USP39-208ENST00000455732 PRELID3AQ96N28 172 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 UBE2D4Q9Y2X8 147 aa11.27□□□□□ -0.61
USP39-208ENST00000455732 HERC1Q15751 4861 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 GAGE12HA6NDE8 117 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 PRSS47A8MTI9 375 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 ZNF664Q8N3J9 261 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 TMEM18Q96B42 140 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 TIMM21Q9BVV7 248 aa11.26□□□□□ -0.61
USP39-208ENST00000455732 CARHSP1Q9Y2V2 147 aaKnown RBP11.26□□□□□ -0.61
USP39-208ENST00000455732 DMBT1Q9UGM3 2413 aaPredicted RBP11.26□□□□□ -0.61
USP39-208ENST00000455732 LINC00959A0A1B0GUT2 108 aa11.25□□□□□ -0.61
USP39-208ENST00000455732 LINC01620Q4KN68 170 aa11.25□□□□□ -0.61
USP39-208ENST00000455732 CNBPP62633 177 aaKnown RBP11.24□□□□□ -0.61
USP39-208ENST00000455732 FOXI1Q12951 378 aa11.23□□□□□ -0.61
USP39-208ENST00000455732 CFAP161Q6P656 301 aa11.23□□□□□ -0.61
USP39-208ENST00000455732 C15orf56Q8N910 161 aa11.23□□□□□ -0.61
USP39-208ENST00000455732 C9orf163Q8N9P6 203 aa11.23□□□□□ -0.61
USP39-208ENST00000455732 hDV102S1A0JD36 115 aa11.22□□□□□ -0.61
USP39-208ENST00000455732 CCL25O15444 150 aa11.22□□□□□ -0.61
USP39-208ENST00000455732 INAFM2P0DMQ5 153 aa11.22□□□□□ -0.61
USP39-208ENST00000455732 RHEBQ15382 184 aa11.22□□□□□ -0.61
USP39-208ENST00000455732 SS18Q15532 418 aa11.22□□□□□ -0.61
USP39-208ENST00000455732 S100PP25815 95 aa11.21□□□□□ -0.61
USP39-208ENST00000455732 XCL1P47992 114 aa11.21□□□□□ -0.61
USP39-208ENST00000455732 Q6ZUT4 128 aa11.21□□□□□ -0.61
USP39-208ENST00000455732 MAP1LC3AQ9H492 121 aa11.21□□□□□ -0.61
USP39-208ENST00000455732 SPANXA1Q9NS26 97 aa11.21□□□□□ -0.61
USP39-208ENST00000455732 RAB5AP20339 215 aa11.2□□□□□ -0.62
USP39-208ENST00000455732 RPL39P62891 51 aaKnown RBP11.2□□□□□ -0.62
USP39-208ENST00000455732 CD164L2Q6UWJ8 174 aa11.2□□□□□ -0.62
USP39-208ENST00000455732 AP5S1Q9NUS5 200 aa11.2□□□□□ -0.62
USP39-208ENST00000455732 FLG2Q5D862 2391 aaPredicted RBP11.19□□□□□ -0.62
USP39-208ENST00000455732 GVQW2A0A096LPI5 108 aaPredicted RBP11.19□□□□□ -0.62
USP39-208ENST00000455732 C1orf196B1AJZ1 125 aa11.19□□□□□ -0.62
USP39-208ENST00000455732 FAM229AH3BQW9 127 aa11.19□□□□□ -0.62
USP39-208ENST00000455732 MRPS36P82909 103 aaKnown RBP11.19□□□□□ -0.62
USP39-208ENST00000455732 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.18□□□□□ -0.62
USP39-208ENST00000455732 SLPIP03973 132 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 SCXQ7RTU7 201 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 Q8N8P6 123 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 FAM104AQ969W3 186 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 CHAC1Q9BUX1 264 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 MYCBP2O75592 4640 aa11.18□□□□□ -0.62
USP39-208ENST00000455732 K7EMI3 77 aa11.17□□□□□ -0.62
USP39-208ENST00000455732 RNASE13Q5GAN3 156 aaKnown RBP11.17□□□□□ -0.62
USP39-208ENST00000455732 GNB1LQ9BYB4 327 aa11.17□□□□□ -0.62
USP39-208ENST00000455732 PYGO1Q9Y3Y4 419 aa11.17□□□□□ -0.62
USP39-208ENST00000455732 IGHV1-58A0A0C4DH39 117 aa11.16□□□□□ -0.62
USP39-208ENST00000455732 LOC389332A0A1B0GUA5 103 aa11.16□□□□□ -0.62
USP39-208ENST00000455732 COX19Q49B96 90 aa11.16□□□□□ -0.62
USP39-208ENST00000455732 SDIM1Q6ZPB5 146 aa11.16□□□□□ -0.62
USP39-208ENST00000455732 RPS10P5Q9NQ39 176 aa11.16□□□□□ -0.62
USP39-208ENST00000455732 TRAV13-1A0A0B4J241 112 aa11.15□□□□□ -0.62
USP39-208ENST00000455732 HIGD2BQ4VC39 106 aa11.15□□□□□ -0.62
USP39-208ENST00000455732 NXT2Q9NPJ8 142 aaKnown RBP11.15□□□□□ -0.62
USP39-208ENST00000455732 IFI27P40305 119 aaPredicted RBP11.14□□□□□ -0.63
USP39-208ENST00000455732 ORMDL2Q53FV1 153 aa11.14□□□□□ -0.63
USP39-208ENST00000455732 CIRBP-AS1Q8TBR5 109 aa11.14□□□□□ -0.63
USP39-208ENST00000455732 IGHV3-64A0A075B6Q5 118 aa11.13□□□□□ -0.63
USP39-208ENST00000455732 COX7A2LO14548 114 aa11.13□□□□□ -0.63
USP39-208ENST00000455732 MT-ND6P03923 174 aa11.13□□□□□ -0.63
USP39-208ENST00000455732 NDUFA5Q16718 116 aa11.13□□□□□ -0.63
USP39-208ENST00000455732 APOC3P02656 99 aa11.12□□□□□ -0.63
USP39-208ENST00000455732 KIAA1644Q3SXP7 199 aa11.12□□□□□ -0.63
USP39-208ENST00000455732 LINC00528Q8N1L1 170 aa11.12□□□□□ -0.63
USP39-208ENST00000455732 SVBPQ8N300 66 aa11.12□□□□□ -0.63
USP39-208ENST00000455732 OPRPNQ99935 248 aaPredicted RBP11.12□□□□□ -0.63
USP39-208ENST00000455732 CYSLTR1Q9Y271 337 aa11.12□□□□□ -0.63
USP39-208ENST00000455732 IGLV4-3A0A075B6K6 122 aa11.11□□□□□ -0.63
USP39-208ENST00000455732 SNAPINO95295 136 aa11.11□□□□□ -0.63
USP39-208ENST00000455732 CIRBPQ14011 172 aaKnown RBP11.11□□□□□ -0.63
USP39-208ENST00000455732 C2orf66Q6UXQ4 117 aa11.11□□□□□ -0.63
USP39-208ENST00000455732 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.11□□□□□ -0.63
USP39-208ENST00000455732 IFITM10A6NMD0 228 aa11.1□□□□□ -0.63
USP39-208ENST00000455732 NPSP0C0P6 89 aa11.1□□□□□ -0.63
USP39-208ENST00000455732 PLA2G1BP04054 148 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms