RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SRRM2Q9UQ35 2752 aaKnown RBP13.64□□□□□ -0.23
HMGB3-205ENST00000455596 IGHV3-64A0A075B6Q5 118 aa13.63□□□□□ -0.23
HMGB3-205ENST00000455596 KIR2DL4Q99706 377 aa13.63□□□□□ -0.23
HMGB3-205ENST00000455596 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-205ENST00000455596 LINC00959A0A1B0GUT2 108 aa13.62□□□□□ -0.23
HMGB3-205ENST00000455596 LINC00862A6NCI5 91 aa13.62□□□□□ -0.23
HMGB3-205ENST00000455596 SLPIP03973 132 aa13.62□□□□□ -0.23
HMGB3-205ENST00000455596 FLG2Q5D862 2391 aaPredicted RBP13.62□□□□□ -0.23
HMGB3-205ENST00000455596 S100A8P05109 93 aa13.61□□□□□ -0.23
HMGB3-205ENST00000455596 FOXI1Q12951 378 aa13.61□□□□□ -0.23
HMGB3-205ENST00000455596 MRPL54Q6P161 138 aaKnown RBP13.61□□□□□ -0.23
HMGB3-205ENST00000455596 CDC42SE2Q9NRR3 84 aa13.61□□□□□ -0.23
HMGB3-205ENST00000455596 CCL25O15444 150 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 CKS2P33552 79 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 XCL1P47992 114 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 HBBP68871 147 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 SMAGPQ0VAQ4 97 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 SS18Q15532 418 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 HIGD2BQ4VC39 106 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 ZNF664Q8N3J9 261 aa13.6□□□□□ -0.23
HMGB3-205ENST00000455596 F8W036 122 aa13.59□□□□□ -0.23
HMGB3-205ENST00000455596 PANO1I0J062 215 aa13.59□□□□□ -0.23
HMGB3-205ENST00000455596 RAB14P61106 215 aa13.59□□□□□ -0.23
HMGB3-205ENST00000455596 C20orf78Q9BR46 151 aa13.59□□□□□ -0.23
HMGB3-205ENST00000455596 TRBV24-1A0A075B6N3 115 aa13.58□□□□□ -0.24
HMGB3-205ENST00000455596 GVQW2A0A096LPI5 108 aaPredicted RBP13.58□□□□□ -0.24
HMGB3-205ENST00000455596 KRTAP10-4P60372 401 aaPredicted RBP13.58□□□□□ -0.24
HMGB3-205ENST00000455596 CIRBPQ14011 172 aaKnown RBP13.58□□□□□ -0.24
HMGB3-205ENST00000455596 CSDC2Q9Y534 153 aaKnown RBP13.58□□□□□ -0.24
HMGB3-205ENST00000455596 A0A1B0GXF2 115 aa13.57□□□□□ -0.24
HMGB3-205ENST00000455596 TMEM18Q96B42 140 aa13.57□□□□□ -0.24
HMGB3-205ENST00000455596 UBE2D4Q9Y2X8 147 aa13.57□□□□□ -0.24
HMGB3-205ENST00000455596 TNFRSF6BO95407 300 aa13.56□□□□□ -0.24
HMGB3-205ENST00000455596 RPL37AP61513 92 aaKnown RBP13.56□□□□□ -0.24
HMGB3-205ENST00000455596 RPL32P62910 135 aaKnown RBP13.56□□□□□ -0.24
HMGB3-205ENST00000455596 D6R8Y8 96 aa13.55□□□□□ -0.24
HMGB3-205ENST00000455596 TCAPO15273 167 aa13.55□□□□□ -0.24
HMGB3-205ENST00000455596 PNRC1Q12796 327 aaPredicted RBP13.55□□□□□ -0.24
HMGB3-205ENST00000455596 DPH3Q96FX2 82 aa13.55□□□□□ -0.24
HMGB3-205ENST00000455596 IGHV1-58A0A0C4DH39 117 aa13.54□□□□□ -0.24
HMGB3-205ENST00000455596 J3QL48 77 aa13.54□□□□□ -0.24
HMGB3-205ENST00000455596 CD164L2Q6UWJ8 174 aa13.54□□□□□ -0.24
HMGB3-205ENST00000455596 ATP5L2Q7Z4Y8 100 aa13.54□□□□□ -0.24
HMGB3-205ENST00000455596 PPBPP02775 128 aa13.53□□□□□ -0.24
HMGB3-205ENST00000455596 CHTF8P0CG12 524 aa13.53□□□□□ -0.24
HMGB3-205ENST00000455596 SPACA4Q8TDM5 124 aa13.53□□□□□ -0.24
HMGB3-205ENST00000455596 TIMM21Q9BVV7 248 aa13.53□□□□□ -0.24
HMGB3-205ENST00000455596 SMIM2Q9BVW6 85 aa13.53□□□□□ -0.24
HMGB3-205ENST00000455596 C1orf196B1AJZ1 125 aa13.52□□□□□ -0.25
HMGB3-205ENST00000455596 PHOX2AO14813 284 aa13.52□□□□□ -0.25
HMGB3-205ENST00000455596 COX6A2Q02221 97 aa13.52□□□□□ -0.25
HMGB3-205ENST00000455596 DMBT1Q9UGM3 2413 aaPredicted RBP13.52□□□□□ -0.25
HMGB3-205ENST00000455596 KRTAP29-1A8MX34 341 aaPredicted RBP13.51□□□□□ -0.25
HMGB3-205ENST00000455596 NPYP01303 97 aa13.51□□□□□ -0.25
HMGB3-205ENST00000455596 RNASE13Q5GAN3 156 aaKnown RBP13.51□□□□□ -0.25
HMGB3-205ENST00000455596 A0A087WYN8 130 aa13.5□□□□□ -0.25
HMGB3-205ENST00000455596 ANAPC16Q96DE5 110 aa13.5□□□□□ -0.25
HMGB3-205ENST00000455596 MT-ND4LP03901 98 aa13.49□□□□□ -0.25
HMGB3-205ENST00000455596 Q6ZUT4 128 aa13.49□□□□□ -0.25
HMGB3-205ENST00000455596 ORMDL3Q8N138 153 aa13.49□□□□□ -0.25
HMGB3-205ENST00000455596 PRSS3P2Q8NHM4 247 aa13.49□□□□□ -0.25
HMGB3-205ENST00000455596 TRAV13-1A0A0B4J241 112 aa13.48□□□□□ -0.25
HMGB3-205ENST00000455596 ZNF561-AS1K7EIQ3 104 aa13.48□□□□□ -0.25
HMGB3-205ENST00000455596 RPL39P62891 51 aaKnown RBP13.48□□□□□ -0.25
HMGB3-205ENST00000455596 CLLU1Q5K131 121 aa13.48□□□□□ -0.25
HMGB3-205ENST00000455596 LINC00526Q96FQ7 95 aa13.48□□□□□ -0.25
HMGB3-205ENST00000455596 MALP21145 153 aa13.47□□□□□ -0.25
HMGB3-205ENST00000455596 TMEM136Q6ZRR5 245 aa13.47□□□□□ -0.25
HMGB3-205ENST00000455596 CARD19Q96LW7 228 aa13.47□□□□□ -0.25
HMGB3-205ENST00000455596 PKIGQ9Y2B9 76 aa13.47□□□□□ -0.25
HMGB3-205ENST00000455596 IGKV2-24A0A0C4DH68 120 aa13.46□□□□□ -0.25
HMGB3-205ENST00000455596 COX7A2LO14548 114 aa13.46□□□□□ -0.25
HMGB3-205ENST00000455596 PRELID3AQ96N28 172 aa13.46□□□□□ -0.25
HMGB3-205ENST00000455596 PLAC8Q9NZF1 115 aa13.46□□□□□ -0.25
HMGB3-205ENST00000455596 MYCBP2O75592 4640 aa13.45□□□□□ -0.26
HMGB3-205ENST00000455596 MAJINQ3KP22 176 aa13.45□□□□□ -0.26
HMGB3-205ENST00000455596 SPANXA1Q9NS26 97 aa13.45□□□□□ -0.26
HMGB3-205ENST00000455596 RAB5AP20339 215 aa13.44□□□□□ -0.26
HMGB3-205ENST00000455596 SYCNQ0VAF6 134 aa13.44□□□□□ -0.26
HMGB3-205ENST00000455596 A0A096LNI7 61 aa13.43□□□□□ -0.26
HMGB3-205ENST00000455596 LAMTOR2Q9Y2Q5 125 aa13.43□□□□□ -0.26
HMGB3-205ENST00000455596 OXTP01178 125 aa13.42□□□□□ -0.26
HMGB3-205ENST00000455596 MRPS36P82909 103 aaKnown RBP13.42□□□□□ -0.26
HMGB3-205ENST00000455596 LINC00474Q9P2X8 69 aa13.42□□□□□ -0.26
HMGB3-205ENST00000455596 IGLV4-69A0A075B6H9 119 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 PRSS47A8MTI9 375 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 APOMO95445 188 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 HNRNPA3P51991 378 aaKnown RBP13.41□□□□□ -0.26
HMGB3-205ENST00000455596 C5orf38Q86SI9 138 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 STPG4Q8N801 248 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 C7orf33Q8WU49 177 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 FAM104AQ969W3 186 aa13.41□□□□□ -0.26
HMGB3-205ENST00000455596 OPRPNQ99935 248 aaPredicted RBP13.4□□□□□ -0.26
HMGB3-205ENST00000455596 MAP1LC3AQ9H492 121 aa13.4□□□□□ -0.26
HMGB3-205ENST00000455596 IFI27P40305 119 aaPredicted RBP13.39□□□□□ -0.27
HMGB3-205ENST00000455596 UQCC3Q6UW78 93 aa13.39□□□□□ -0.27
HMGB3-205ENST00000455596 LOC389332A0A1B0GUA5 103 aa13.38□□□□□ -0.27
HMGB3-205ENST00000455596 CAMK2N2Q96S95 79 aa13.38□□□□□ -0.27
HMGB3-205ENST00000455596 IFITM10A6NMD0 228 aa13.37□□□□□ -0.27
HMGB3-205ENST00000455596 IFITM2Q01629 132 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms