RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 SMDT1Q9H4I9 107 aa9.8□□□□□ -0.84
CHD3-205ENST00000449744 C7orf77A4D0Y5 90 aa9.79□□□□□ -0.84
CHD3-205ENST00000449744 SLPIP03973 132 aa9.79□□□□□ -0.84
CHD3-205ENST00000449744 SRSF3P84103 164 aaKnown RBP9.79□□□□□ -0.84
CHD3-205ENST00000449744 HIGD2BQ4VC39 106 aa9.79□□□□□ -0.84
CHD3-205ENST00000449744 MYCBP2O75592 4640 aa9.78□□□□□ -0.84
CHD3-205ENST00000449744 KRTAP29-1A8MX34 341 aaPredicted RBP9.78□□□□□ -0.84
CHD3-205ENST00000449744 PANO1I0J062 215 aa9.78□□□□□ -0.84
CHD3-205ENST00000449744 XCL1P47992 114 aa9.78□□□□□ -0.84
CHD3-205ENST00000449744 KRTAP10-4P60372 401 aaPredicted RBP9.78□□□□□ -0.84
CHD3-205ENST00000449744 SS18Q15532 418 aa9.78□□□□□ -0.84
CHD3-205ENST00000449744 KIR2DL4Q99706 377 aa9.78□□□□□ -0.84
CHD3-205ENST00000449744 LINC00959A0A1B0GUT2 108 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 SMIM27A0A1W2PRY6 76 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 PPP1R2P9O14990 202 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 CCL25O15444 150 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 CAMPP49913 170 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 SUMO2P61956 95 aaKnown RBP9.77□□□□□ -0.85
CHD3-205ENST00000449744 SMAGPQ0VAQ4 97 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 FOXI1Q12951 378 aa9.77□□□□□ -0.85
CHD3-205ENST00000449744 MRPL52Q86TS9 123 aaKnown RBP9.77□□□□□ -0.85
CHD3-205ENST00000449744 GVQW2A0A096LPI5 108 aaPredicted RBP9.76□□□□□ -0.85
CHD3-205ENST00000449744 A0A1B0GW15 77 aa9.76□□□□□ -0.85
CHD3-205ENST00000449744 FAM104BQ5XKR9 115 aa9.76□□□□□ -0.85
CHD3-205ENST00000449744 ZNF664Q8N3J9 261 aa9.76□□□□□ -0.85
CHD3-205ENST00000449744 NRACQ8N912 160 aa9.76□□□□□ -0.85
CHD3-205ENST00000449744 CDC42SE2Q9NRR3 84 aa9.76□□□□□ -0.85
CHD3-205ENST00000449744 CHTF8P0CG12 524 aa9.75□□□□□ -0.85
CHD3-205ENST00000449744 CIRBPQ14011 172 aaKnown RBP9.75□□□□□ -0.85
CHD3-205ENST00000449744 MRPL51Q4U2R6 128 aaKnown RBP9.75□□□□□ -0.85
CHD3-205ENST00000449744 IGHV1-58A0A0C4DH39 117 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 LINC00862A6NCI5 91 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 S100A8P05109 93 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 CKS2P33552 79 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 COX6A2Q02221 97 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 CLLU1Q5K131 121 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 TMEM18Q96B42 140 aa9.74□□□□□ -0.85
CHD3-205ENST00000449744 A0A087WYN8 130 aa9.73□□□□□ -0.85
CHD3-205ENST00000449744 MRPL54Q6P161 138 aaKnown RBP9.73□□□□□ -0.85
CHD3-205ENST00000449744 CD164L2Q6UWJ8 174 aa9.73□□□□□ -0.85
CHD3-205ENST00000449744 SPACA4Q8TDM5 124 aa9.73□□□□□ -0.85
CHD3-205ENST00000449744 F8W036 122 aa9.72□□□□□ -0.85
CHD3-205ENST00000449744 HBBP68871 147 aa9.72□□□□□ -0.85
CHD3-205ENST00000449744 C20orf78Q9BR46 151 aa9.72□□□□□ -0.85
CHD3-205ENST00000449744 CSDC2Q9Y534 153 aaKnown RBP9.72□□□□□ -0.85
CHD3-205ENST00000449744 TCAPO15273 167 aa9.71□□□□□ -0.86
CHD3-205ENST00000449744 OXTP01178 125 aa9.71□□□□□ -0.86
CHD3-205ENST00000449744 PRSS3P2Q8NHM4 247 aa9.71□□□□□ -0.86
CHD3-205ENST00000449744 PKIGQ9Y2B9 76 aa9.71□□□□□ -0.86
CHD3-205ENST00000449744 UBE2D4Q9Y2X8 147 aa9.71□□□□□ -0.86
CHD3-205ENST00000449744 TRBV24-1A0A075B6N3 115 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 IGKV2-24A0A0C4DH68 120 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 C1orf196B1AJZ1 125 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 ZNF561-AS1K7EIQ3 104 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 TNFRSF6BO95407 300 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 MALP21145 153 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 MAJINQ3KP22 176 aa9.7□□□□□ -0.86
CHD3-205ENST00000449744 D6R8Y8 96 aa9.69□□□□□ -0.86
CHD3-205ENST00000449744 RPL32P62910 135 aaKnown RBP9.69□□□□□ -0.86
CHD3-205ENST00000449744 RNASE13Q5GAN3 156 aaKnown RBP9.69□□□□□ -0.86
CHD3-205ENST00000449744 C7orf33Q8WU49 177 aa9.69□□□□□ -0.86
CHD3-205ENST00000449744 LINC00526Q96FQ7 95 aa9.69□□□□□ -0.86
CHD3-205ENST00000449744 CARD19Q96LW7 228 aa9.69□□□□□ -0.86
CHD3-205ENST00000449744 PLAC8Q9NZF1 115 aa9.69□□□□□ -0.86
CHD3-205ENST00000449744 TRAV13-1A0A0B4J241 112 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 A0A1B0GXF2 115 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 PPBPP02775 128 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 COMMD7Q86VX2 200 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 TIMM21Q9BVV7 248 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 SMIM2Q9BVW6 85 aa9.68□□□□□ -0.86
CHD3-205ENST00000449744 COX7A2LO14548 114 aa9.67□□□□□ -0.86
CHD3-205ENST00000449744 HNRNPA3P51991 378 aaKnown RBP9.67□□□□□ -0.86
CHD3-205ENST00000449744 SYCNQ0VAF6 134 aa9.67□□□□□ -0.86
CHD3-205ENST00000449744 Q6ZUT4 128 aa9.67□□□□□ -0.86
CHD3-205ENST00000449744 A0A096LNI7 61 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 PHOX2AO14813 284 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 ATP6V1G1O75348 118 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 NPYP01303 97 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 ATP5L2Q7Z4Y8 100 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 STPG4Q8N801 248 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 LINC00474Q9P2X8 69 aa9.66□□□□□ -0.86
CHD3-205ENST00000449744 RPL39P62891 51 aaKnown RBP9.65□□□□□ -0.86
CHD3-205ENST00000449744 PNRC1Q12796 327 aaPredicted RBP9.65□□□□□ -0.86
CHD3-205ENST00000449744 SLC7A5P1Q8MH63 180 aa9.65□□□□□ -0.86
CHD3-205ENST00000449744 ORMDL3Q8N138 153 aa9.65□□□□□ -0.86
CHD3-205ENST00000449744 APOMO95445 188 aa9.64□□□□□ -0.87
CHD3-205ENST00000449744 RAB5AP20339 215 aa9.64□□□□□ -0.87
CHD3-205ENST00000449744 TMEM136Q6ZRR5 245 aa9.64□□□□□ -0.87
CHD3-205ENST00000449744 C5orf38Q86SI9 138 aa9.64□□□□□ -0.87
CHD3-205ENST00000449744 SPANXA1Q9NS26 97 aa9.64□□□□□ -0.87
CHD3-205ENST00000449744 IGLV4-69A0A075B6H9 119 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 MT-ND4LP03901 98 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 S100A1P23297 94 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 ANAPC16Q96DE5 110 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 PRELID3AQ96N28 172 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 CAMK2N2Q96S95 79 aa9.63□□□□□ -0.87
CHD3-205ENST00000449744 SERTAD4-AS1Q5TG53 156 aa9.62□□□□□ -0.87
CHD3-205ENST00000449744 Q6ZRU5 148 aa9.62□□□□□ -0.87
CHD3-205ENST00000449744 MRPS36P82909 103 aaKnown RBP9.61□□□□□ -0.87
CHD3-205ENST00000449744 LRP1Q07954 4544 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms