RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 CDC42SE2Q9NRR3 84 aa8.66□□□□□ -1.02
HMGN1-208ENST00000443046 RAB19A4D1S5 217 aa8.65□□□□□ -1.02
HMGN1-208ENST00000443046 TWIST1Q15672 202 aa8.65□□□□□ -1.02
HMGN1-208ENST00000443046 PRR4Q16378 134 aa8.65□□□□□ -1.02
HMGN1-208ENST00000443046 MRPL52Q86TS9 123 aaKnown RBP8.65□□□□□ -1.02
HMGN1-208ENST00000443046 KRTAP11-1Q8IUC1 163 aa8.65□□□□□ -1.02
HMGN1-208ENST00000443046 BTF3L4Q96K17 158 aa8.65□□□□□ -1.02
HMGN1-208ENST00000443046 TRBV20OR9-2A0A075B6H5 130 aa8.64□□□□□ -1.03
HMGN1-208ENST00000443046 I3L3M4 83 aa8.64□□□□□ -1.03
HMGN1-208ENST00000443046 H2AFB1P0C5Y9 115 aa8.64□□□□□ -1.03
HMGN1-208ENST00000443046 EIF5AP63241 154 aaKnown RBP8.64□□□□□ -1.03
HMGN1-208ENST00000443046 CCL20P78556 96 aa8.64□□□□□ -1.03
HMGN1-208ENST00000443046 EIF5AL1Q6IS14 154 aaKnown RBP8.64□□□□□ -1.03
HMGN1-208ENST00000443046 C2orf48Q96LS8 159 aa8.64□□□□□ -1.03
HMGN1-208ENST00000443046 TRBV6-5A0A0K0K1A5 114 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 TSHBP01222 138 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 GNG4P50150 75 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 FOXA3P55318 350 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-208ENST00000443046 TEX261Q6UWH6 196 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 NUDT10Q8NFP7 164 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 NUDT11Q96G61 164 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 FAM210AQ96ND0 272 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 MANBALQ9NQG1 85 aa8.63□□□□□ -1.03
HMGN1-208ENST00000443046 RNF151Q2KHN1 245 aa8.62□□□□□ -1.03
HMGN1-208ENST00000443046 CAMK2N2Q96S95 79 aa8.62□□□□□ -1.03
HMGN1-208ENST00000443046 COX7A2LO14548 114 aa8.61□□□□□ -1.03
HMGN1-208ENST00000443046 BCL2L11O43521 198 aa8.61□□□□□ -1.03
HMGN1-208ENST00000443046 PMCHP20382 165 aa8.61□□□□□ -1.03
HMGN1-208ENST00000443046 MUC17Q685J3 4493 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 TRAV1-1A0A0B4J248 108 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 C1orf196B1AJZ1 125 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 MALP21145 153 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 RPL18AQ02543 176 aaKnown RBP8.6□□□□□ -1.03
HMGN1-208ENST00000443046 ZNF345Q14585 488 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 MRAP2Q96G30 205 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 OPRPNQ99935 248 aaPredicted RBP8.6□□□□□ -1.03
HMGN1-208ENST00000443046 BIN3Q9NQY0 253 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 GNG13Q9P2W3 67 aa8.6□□□□□ -1.03
HMGN1-208ENST00000443046 A0A087WZ39 114 aa8.59□□□□□ -1.03
HMGN1-208ENST00000443046 TMEM242Q9NWH2 141 aa8.59□□□□□ -1.03
HMGN1-208ENST00000443046 TRBV27A0A0K0K1C4 114 aa8.58□□□□□ -1.04
HMGN1-208ENST00000443046 FAM168BA1KXE4 195 aa8.58□□□□□ -1.04
HMGN1-208ENST00000443046 RPL13AP40429 203 aaKnown RBP8.58□□□□□ -1.04
HMGN1-208ENST00000443046 POLR2KP53803 58 aaKnown RBP8.58□□□□□ -1.04
HMGN1-208ENST00000443046 TSKUQ8WUA8 353 aa8.58□□□□□ -1.04
HMGN1-208ENST00000443046 RNASE7Q9H1E1 156 aaKnown RBP8.58□□□□□ -1.04
HMGN1-208ENST00000443046 RPP21Q9H633 154 aaKnown RBP8.58□□□□□ -1.04
HMGN1-208ENST00000443046 PDE6DO43924 150 aa8.57□□□□□ -1.04
HMGN1-208ENST00000443046 SMIM15Q7Z3B0 74 aa8.57□□□□□ -1.04
HMGN1-208ENST00000443046 KRTAP7-1Q8IUC3 87 aa8.57□□□□□ -1.04
HMGN1-208ENST00000443046 CARHSP1Q9Y2V2 147 aaKnown RBP8.57□□□□□ -1.04
HMGN1-208ENST00000443046 CSDC2Q9Y534 153 aaKnown RBP8.57□□□□□ -1.04
HMGN1-208ENST00000443046 SMLR1H3BR10 107 aa8.56□□□□□ -1.04
HMGN1-208ENST00000443046 ST20Q9HBF5 79 aa8.56□□□□□ -1.04
HMGN1-208ENST00000443046 MED9Q9NWA0 146 aa8.56□□□□□ -1.04
HMGN1-208ENST00000443046 MRPL35Q9NZE8 188 aaKnown RBP8.56□□□□□ -1.04
HMGN1-208ENST00000443046 C7orf77A4D0Y5 90 aa8.55□□□□□ -1.04
HMGN1-208ENST00000443046 K7EN84 100 aa8.55□□□□□ -1.04
HMGN1-208ENST00000443046 TLX1NBP0CAT3 122 aa8.55□□□□□ -1.04
HMGN1-208ENST00000443046 UBE2D1P51668 147 aa8.55□□□□□ -1.04
HMGN1-208ENST00000443046 C5orf38Q86SI9 138 aa8.55□□□□□ -1.04
HMGN1-208ENST00000443046 F8WDY8 70 aa8.54□□□□□ -1.04
HMGN1-208ENST00000443046 SPAG11BQ08648 103 aa8.54□□□□□ -1.04
HMGN1-208ENST00000443046 OR10D4PQ8NGN7 298 aa8.54□□□□□ -1.04
HMGN1-208ENST00000443046 UBE2D4Q9Y2X8 147 aa8.54□□□□□ -1.04
HMGN1-208ENST00000443046 HMSDA8MTL9 139 aa8.53□□□□□ -1.04
HMGN1-208ENST00000443046 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
HMGN1-208ENST00000443046 IMMP2LQ96T52 175 aa8.53□□□□□ -1.04
HMGN1-208ENST00000443046 TRAV13-1A0A0B4J241 112 aa8.52□□□□□ -1.05
HMGN1-208ENST00000443046 RNASE13Q5GAN3 156 aaKnown RBP8.52□□□□□ -1.05
HMGN1-208ENST00000443046 C10orf25Q5T742 122 aa8.52□□□□□ -1.05
HMGN1-208ENST00000443046 FSIP2Q5CZC0 6907 aa8.52□□□□□ -1.05
HMGN1-208ENST00000443046 KANTRA0A1W2PQU2 76 aa8.51□□□□□ -1.05
HMGN1-208ENST00000443046 FAM19A5Q7Z5A7 132 aaPredicted RBP8.51□□□□□ -1.05
HMGN1-208ENST00000443046 TMEM241Q24JQ0 296 aa8.5□□□□□ -1.05
HMGN1-208ENST00000443046 TMEM191AQ9H0A3 160 aa8.5□□□□□ -1.05
HMGN1-208ENST00000443046 C6orf48Q9UBA6 75 aa8.5□□□□□ -1.05
HMGN1-208ENST00000443046 VCYO14598 125 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 NDUFA1O15239 70 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 TSPAN13O95857 204 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 RAB4AP20338 218 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 UNQ6190/PRO20217Q6UXQ8 127 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 FAM104AQ969W3 186 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 TIMM21Q9BVV7 248 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 SMDT1Q9H4I9 107 aa8.49□□□□□ -1.05
HMGN1-208ENST00000443046 IGHV3OR16-9A0A0B4J2B5 98 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 TEX46H3BTG2 121 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 M0QXV9 152 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 ZNF861PO60384 105 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 SMAGPQ0VAQ4 97 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 Q6ZUT4 128 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 FAM231DQ6ZW35 169 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 ORAOV1Q8WV07 137 aa8.48□□□□□ -1.05
HMGN1-208ENST00000443046 A8MWL6 223 aa8.47□□□□□ -1.05
HMGN1-208ENST00000443046 UBE2BP63146 152 aa8.47□□□□□ -1.05
HMGN1-208ENST00000443046 GATCO43716 136 aaKnown RBP8.46□□□□□ -1.06
HMGN1-208ENST00000443046 FCER1GP30273 86 aa8.46□□□□□ -1.06
HMGN1-208ENST00000443046 GAGE2EQ4V326 116 aa8.46□□□□□ -1.06
HMGN1-208ENST00000443046 CT83Q5H943 113 aa8.46□□□□□ -1.06
HMGN1-208ENST00000443046 NRACQ8N912 160 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms