RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 GAGE12HA6NDE8 117 aa12.85□□□□□ -0.35
SHROOM1-204ENST00000440118 FGF6P10767 208 aa12.85□□□□□ -0.35
SHROOM1-204ENST00000440118 MRAP2Q96G30 205 aa12.85□□□□□ -0.35
SHROOM1-204ENST00000440118 TRBV6-5A0A0K0K1A5 114 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 COLCA2A8K830 154 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 AMN1Q8IY45 258 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 C9orf163Q8N9P6 203 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 ISOC2Q96AB3 205 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 V9GYV3 84 aa12.84□□□□□ -0.35
SHROOM1-204ENST00000440118 MYCBP2O75592 4640 aa12.83□□□□□ -0.36
SHROOM1-204ENST00000440118 TRAV9-1A0A075B6T8 112 aa12.83□□□□□ -0.36
SHROOM1-204ENST00000440118 ZNF25P17030 456 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-204ENST00000440118 CFAP161Q6P656 301 aa12.83□□□□□ -0.36
SHROOM1-204ENST00000440118 NAT8BQ9UHF3 227 aa12.83□□□□□ -0.36
SHROOM1-204ENST00000440118 J3QL48 77 aa12.82□□□□□ -0.36
SHROOM1-204ENST00000440118 RAB5AP20339 215 aa12.82□□□□□ -0.36
SHROOM1-204ENST00000440118 NUP35Q8NFH5 326 aa12.82□□□□□ -0.36
SHROOM1-204ENST00000440118 OR5A1Q8NGJ0 315 aa12.82□□□□□ -0.36
SHROOM1-204ENST00000440118 TRBV24-1A0A075B6N3 115 aa12.81□□□□□ -0.36
SHROOM1-204ENST00000440118 GAS8-AS1O95177 125 aa12.81□□□□□ -0.36
SHROOM1-204ENST00000440118 RAB4AP20338 218 aa12.81□□□□□ -0.36
SHROOM1-204ENST00000440118 CNBPP62633 177 aaKnown RBP12.81□□□□□ -0.36
SHROOM1-204ENST00000440118 CHCHD10Q8WYQ3 142 aaPredicted RBP12.81□□□□□ -0.36
SHROOM1-204ENST00000440118 IGHV3-64A0A075B6Q5 118 aa12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 PPP1R17O96001 155 aa12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 TSHBP01222 138 aa12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 FCER1GP30273 86 aa12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 RPS10P46783 165 aaKnown RBP12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 RNF185Q96GF1 192 aa12.8□□□□□ -0.36
SHROOM1-204ENST00000440118 COX19Q49B96 90 aa12.79□□□□□ -0.36
SHROOM1-204ENST00000440118 DPH3Q96FX2 82 aa12.79□□□□□ -0.36
SHROOM1-204ENST00000440118 SMKR1H3BMG3 65 aa12.78□□□□□ -0.36
SHROOM1-204ENST00000440118 S100A6P06703 90 aa12.78□□□□□ -0.36
SHROOM1-204ENST00000440118 HIGD2BQ4VC39 106 aa12.78□□□□□ -0.36
SHROOM1-204ENST00000440118 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.78□□□□□ -0.36
SHROOM1-204ENST00000440118 XCL1P47992 114 aa12.77□□□□□ -0.37
SHROOM1-204ENST00000440118 CAMPP49913 170 aa12.77□□□□□ -0.37
SHROOM1-204ENST00000440118 RPL37AP61513 92 aaKnown RBP12.77□□□□□ -0.37
SHROOM1-204ENST00000440118 C15orf56Q8N910 161 aa12.77□□□□□ -0.37
SHROOM1-204ENST00000440118 TRBV27A0A0K0K1C4 114 aa12.76□□□□□ -0.37
SHROOM1-204ENST00000440118 VCYO14598 125 aa12.76□□□□□ -0.37
SHROOM1-204ENST00000440118 SDIM1Q6ZPB5 146 aa12.76□□□□□ -0.37
SHROOM1-204ENST00000440118 KIR2DL4Q99706 377 aa12.76□□□□□ -0.37
SHROOM1-204ENST00000440118 ESDP10768 282 aa12.75□□□□□ -0.37
SHROOM1-204ENST00000440118 POLR2KP53803 58 aaKnown RBP12.75□□□□□ -0.37
SHROOM1-204ENST00000440118 SUMO2P61956 95 aaKnown RBP12.75□□□□□ -0.37
SHROOM1-204ENST00000440118 SMAGPQ0VAQ4 97 aa12.75□□□□□ -0.37
SHROOM1-204ENST00000440118 A0A1B0GW15 77 aa12.74□□□□□ -0.37
SHROOM1-204ENST00000440118 SMIM27A0A1W2PRY6 76 aa12.74□□□□□ -0.37
SHROOM1-204ENST00000440118 SS18Q15532 418 aa12.74□□□□□ -0.37
SHROOM1-204ENST00000440118 CCL25O15444 150 aa12.73□□□□□ -0.37
SHROOM1-204ENST00000440118 S100A8P05109 93 aa12.73□□□□□ -0.37
SHROOM1-204ENST00000440118 YPEL4Q96NS1 127 aa12.73□□□□□ -0.37
SHROOM1-204ENST00000440118 LINC00959A0A1B0GUT2 108 aa12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 PANO1I0J062 215 aa12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 CKS2P33552 79 aa12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 FOXI1Q12951 378 aa12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 MRPL51Q4U2R6 128 aaKnown RBP12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 FAM104BQ5XKR9 115 aa12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 MRPL54Q6P161 138 aaKnown RBP12.72□□□□□ -0.37
SHROOM1-204ENST00000440118 SLPIP03973 132 aa12.71□□□□□ -0.37
SHROOM1-204ENST00000440118 CHTF8P0CG12 524 aa12.71□□□□□ -0.37
SHROOM1-204ENST00000440118 MRPL52Q86TS9 123 aaKnown RBP12.71□□□□□ -0.37
SHROOM1-204ENST00000440118 ZNF664Q8N3J9 261 aa12.71□□□□□ -0.37
SHROOM1-204ENST00000440118 NRACQ8N912 160 aa12.71□□□□□ -0.37
SHROOM1-204ENST00000440118 GVQW2A0A096LPI5 108 aaPredicted RBP12.7□□□□□ -0.38
SHROOM1-204ENST00000440118 HBBP68871 147 aa12.7□□□□□ -0.38
SHROOM1-204ENST00000440118 TMEM18Q96B42 140 aa12.7□□□□□ -0.38
SHROOM1-204ENST00000440118 CDC42SE2Q9NRR3 84 aa12.7□□□□□ -0.38
SHROOM1-204ENST00000440118 IGHV1-58A0A0C4DH39 117 aa12.69□□□□□ -0.38
SHROOM1-204ENST00000440118 IGKV2-24A0A0C4DH68 120 aa12.68□□□□□ -0.38
SHROOM1-204ENST00000440118 COX6A2Q02221 97 aa12.68□□□□□ -0.38
SHROOM1-204ENST00000440118 TGIF2-C20orf24A0A0A6YYL0 155 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 KRTAP29-1A8MX34 341 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 MT-ND6P03923 174 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 KRTAP10-4P60372 401 aaPredicted RBP12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 CIRBPQ14011 172 aaKnown RBP12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 CD164L2Q6UWJ8 174 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 SPACA4Q8TDM5 124 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 C20orf78Q9BR46 151 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 PKIGQ9Y2B9 76 aa12.67□□□□□ -0.38
SHROOM1-204ENST00000440118 A0A087WYN8 130 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 LOC105371267A0A1B0GV96 52 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 D6R8Y8 96 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 ZNF561-AS1K7EIQ3 104 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 TCAPO15273 167 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 MALP21145 153 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 RNASE13Q5GAN3 156 aaKnown RBP12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 UBE2D4Q9Y2X8 147 aa12.66□□□□□ -0.38
SHROOM1-204ENST00000440118 TNFRSF6BO95407 300 aa12.65□□□□□ -0.38
SHROOM1-204ENST00000440118 MAJINQ3KP22 176 aa12.65□□□□□ -0.38
SHROOM1-204ENST00000440118 CARD19Q96LW7 228 aa12.65□□□□□ -0.38
SHROOM1-204ENST00000440118 TRAV13-1A0A0B4J241 112 aa12.64□□□□□ -0.39
SHROOM1-204ENST00000440118 LINC00526Q96FQ7 95 aa12.64□□□□□ -0.39
SHROOM1-204ENST00000440118 SMIM2Q9BVW6 85 aa12.64□□□□□ -0.39
SHROOM1-204ENST00000440118 CSDC2Q9Y534 153 aaKnown RBP12.64□□□□□ -0.39
SHROOM1-204ENST00000440118 COX7A2LO14548 114 aa12.63□□□□□ -0.39
SHROOM1-204ENST00000440118 Q6ZUT4 128 aa12.63□□□□□ -0.39
SHROOM1-204ENST00000440118 PRSS3P2Q8NHM4 247 aa12.63□□□□□ -0.39
SHROOM1-204ENST00000440118 C7orf33Q8WU49 177 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms