RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 A0A1B0GW15 77 aa11.83□□□□□ -0.52
GPC1-205ENST00000427506 SLPIP03973 132 aa11.83□□□□□ -0.52
GPC1-205ENST00000427506 XCL1P47992 114 aa11.83□□□□□ -0.52
GPC1-205ENST00000427506 SUMO2P61956 95 aaKnown RBP11.83□□□□□ -0.52
GPC1-205ENST00000427506 NRACQ8N912 160 aa11.83□□□□□ -0.52
GPC1-205ENST00000427506 KIR2DL4Q99706 377 aa11.83□□□□□ -0.52
GPC1-205ENST00000427506 LINC00959A0A1B0GUT2 108 aa11.82□□□□□ -0.52
GPC1-205ENST00000427506 J3QL48 77 aa11.82□□□□□ -0.52
GPC1-205ENST00000427506 PPP1R2P9O14990 202 aa11.82□□□□□ -0.52
GPC1-205ENST00000427506 MRPL52Q86TS9 123 aaKnown RBP11.82□□□□□ -0.52
GPC1-205ENST00000427506 FLG2Q5D862 2391 aaPredicted RBP11.81□□□□□ -0.52
GPC1-205ENST00000427506 PANO1I0J062 215 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 CCL25O15444 150 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 CKS2P33552 79 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 FOXI1Q12951 378 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 SS18Q15532 418 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 MRPL54Q6P161 138 aaKnown RBP11.81□□□□□ -0.52
GPC1-205ENST00000427506 ZNF664Q8N3J9 261 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 CDC42SE2Q9NRR3 84 aa11.81□□□□□ -0.52
GPC1-205ENST00000427506 LINC00862A6NCI5 91 aa11.8□□□□□ -0.52
GPC1-205ENST00000427506 S100A8P05109 93 aa11.8□□□□□ -0.52
GPC1-205ENST00000427506 RPL37AP61513 92 aaKnown RBP11.8□□□□□ -0.52
GPC1-205ENST00000427506 SMAGPQ0VAQ4 97 aa11.8□□□□□ -0.52
GPC1-205ENST00000427506 F8W036 122 aa11.79□□□□□ -0.52
GPC1-205ENST00000427506 HBBP68871 147 aa11.79□□□□□ -0.52
GPC1-205ENST00000427506 KRTAP10-4P60372 401 aaPredicted RBP11.78□□□□□ -0.52
GPC1-205ENST00000427506 RAB14P61106 215 aa11.78□□□□□ -0.52
GPC1-205ENST00000427506 C20orf78Q9BR46 151 aa11.78□□□□□ -0.52
GPC1-205ENST00000427506 DMBT1Q9UGM3 2413 aaPredicted RBP11.77□□□□□ -0.52
GPC1-205ENST00000427506 GVQW2A0A096LPI5 108 aaPredicted RBP11.77□□□□□ -0.53
GPC1-205ENST00000427506 CHTF8P0CG12 524 aa11.77□□□□□ -0.53
GPC1-205ENST00000427506 TMEM18Q96B42 140 aa11.77□□□□□ -0.53
GPC1-205ENST00000427506 IGHV1-58A0A0C4DH39 117 aa11.76□□□□□ -0.53
GPC1-205ENST00000427506 TNFRSF6BO95407 300 aa11.76□□□□□ -0.53
GPC1-205ENST00000427506 COX6A2Q02221 97 aa11.76□□□□□ -0.53
GPC1-205ENST00000427506 CIRBPQ14011 172 aaKnown RBP11.76□□□□□ -0.53
GPC1-205ENST00000427506 UBE2D4Q9Y2X8 147 aa11.76□□□□□ -0.53
GPC1-205ENST00000427506 TRBV24-1A0A075B6N3 115 aa11.75□□□□□ -0.53
GPC1-205ENST00000427506 A0A1B0GXF2 115 aa11.75□□□□□ -0.53
GPC1-205ENST00000427506 D6R8Y8 96 aa11.75□□□□□ -0.53
GPC1-205ENST00000427506 CD164L2Q6UWJ8 174 aa11.75□□□□□ -0.53
GPC1-205ENST00000427506 CSDC2Q9Y534 153 aaKnown RBP11.75□□□□□ -0.53
GPC1-205ENST00000427506 A0A087WYN8 130 aa11.74□□□□□ -0.53
GPC1-205ENST00000427506 KRTAP29-1A8MX34 341 aaPredicted RBP11.74□□□□□ -0.53
GPC1-205ENST00000427506 TCAPO15273 167 aa11.74□□□□□ -0.53
GPC1-205ENST00000427506 RNASE13Q5GAN3 156 aaKnown RBP11.74□□□□□ -0.53
GPC1-205ENST00000427506 SPACA4Q8TDM5 124 aa11.74□□□□□ -0.53
GPC1-205ENST00000427506 MYCBP2O75592 4640 aa11.73□□□□□ -0.53
GPC1-205ENST00000427506 C1orf196B1AJZ1 125 aa11.73□□□□□ -0.53
GPC1-205ENST00000427506 RPL32P62910 135 aaKnown RBP11.73□□□□□ -0.53
GPC1-205ENST00000427506 PRSS3P2Q8NHM4 247 aa11.73□□□□□ -0.53
GPC1-205ENST00000427506 SMIM2Q9BVW6 85 aa11.73□□□□□ -0.53
GPC1-205ENST00000427506 TRAV13-1A0A0B4J241 112 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 IGKV2-24A0A0C4DH68 120 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 ZNF561-AS1K7EIQ3 104 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 PPBPP02775 128 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 MALP21145 153 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 PNRC1Q12796 327 aaPredicted RBP11.72□□□□□ -0.53
GPC1-205ENST00000427506 ATP5L2Q7Z4Y8 100 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 LINC00526Q96FQ7 95 aa11.72□□□□□ -0.53
GPC1-205ENST00000427506 NPYP01303 97 aa11.71□□□□□ -0.53
GPC1-205ENST00000427506 MAJINQ3KP22 176 aa11.71□□□□□ -0.53
GPC1-205ENST00000427506 Q6ZUT4 128 aa11.71□□□□□ -0.53
GPC1-205ENST00000427506 TIMM21Q9BVV7 248 aa11.71□□□□□ -0.53
GPC1-205ENST00000427506 COX7A2LO14548 114 aa11.7□□□□□ -0.54
GPC1-205ENST00000427506 MT-ND4LP03901 98 aa11.7□□□□□ -0.54
GPC1-205ENST00000427506 TMEM136Q6ZRR5 245 aa11.7□□□□□ -0.54
GPC1-205ENST00000427506 ORMDL3Q8N138 153 aa11.7□□□□□ -0.54
GPC1-205ENST00000427506 CARD19Q96LW7 228 aa11.7□□□□□ -0.54
GPC1-205ENST00000427506 PHOX2AO14813 284 aa11.69□□□□□ -0.54
GPC1-205ENST00000427506 RPL39P62891 51 aaKnown RBP11.69□□□□□ -0.54
GPC1-205ENST00000427506 ANAPC16Q96DE5 110 aa11.69□□□□□ -0.54
GPC1-205ENST00000427506 PKIGQ9Y2B9 76 aa11.69□□□□□ -0.54
GPC1-205ENST00000427506 RAB5AP20339 215 aa11.68□□□□□ -0.54
GPC1-205ENST00000427506 SYCNQ0VAF6 134 aa11.68□□□□□ -0.54
GPC1-205ENST00000427506 PRELID3AQ96N28 172 aa11.68□□□□□ -0.54
GPC1-205ENST00000427506 PLAC8Q9NZF1 115 aa11.68□□□□□ -0.54
GPC1-205ENST00000427506 A0A096LNI7 61 aa11.67□□□□□ -0.54
GPC1-205ENST00000427506 OXTP01178 125 aa11.67□□□□□ -0.54
GPC1-205ENST00000427506 STPG4Q8N801 248 aa11.67□□□□□ -0.54
GPC1-205ENST00000427506 C7orf33Q8WU49 177 aa11.67□□□□□ -0.54
GPC1-205ENST00000427506 SPANXA1Q9NS26 97 aa11.67□□□□□ -0.54
GPC1-205ENST00000427506 HNRNPA3P51991 378 aaKnown RBP11.66□□□□□ -0.54
GPC1-205ENST00000427506 C5orf38Q86SI9 138 aa11.66□□□□□ -0.54
GPC1-205ENST00000427506 HERC1Q15751 4861 aa11.66□□□□□ -0.54
GPC1-205ENST00000427506 IGLV4-69A0A075B6H9 119 aa11.65□□□□□ -0.54
GPC1-205ENST00000427506 APOMO95445 188 aa11.65□□□□□ -0.54
GPC1-205ENST00000427506 CLLU1Q5K131 121 aa11.65□□□□□ -0.54
GPC1-205ENST00000427506 LINC00474Q9P2X8 69 aa11.65□□□□□ -0.54
GPC1-205ENST00000427506 OPRPNQ99935 248 aaPredicted RBP11.64□□□□□ -0.55
GPC1-205ENST00000427506 LOC389332A0A1B0GUA5 103 aa11.63□□□□□ -0.55
GPC1-205ENST00000427506 CAMK2N2Q96S95 79 aa11.63□□□□□ -0.55
GPC1-205ENST00000427506 IFITM10A6NMD0 228 aa11.62□□□□□ -0.55
GPC1-205ENST00000427506 IFI27P40305 119 aaPredicted RBP11.62□□□□□ -0.55
GPC1-205ENST00000427506 MRPS36P82909 103 aaKnown RBP11.62□□□□□ -0.55
GPC1-205ENST00000427506 Q6ZRU5 148 aa11.62□□□□□ -0.55
GPC1-205ENST00000427506 MAP1LC3AQ9H492 121 aa11.62□□□□□ -0.55
GPC1-205ENST00000427506 LAMTOR2Q9Y2Q5 125 aa11.62□□□□□ -0.55
GPC1-205ENST00000427506 LOC107984640A0A0U1RRK4 108 aa11.6□□□□□ -0.55
GPC1-205ENST00000427506 SPAG11BQ08648 103 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms