RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZNF625Q96I27 306 aaPredicted RBP7.27□□□□□ -1.24
USP54-205ENST00000424265 CCDC168Q8NDH2 2452 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 A0A096LNT2 108 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 DEFB131AP59861 70 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 Q8N2B8 174 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 C14orf178Q8N769 122 aaPredicted RBP7.27□□□□□ -1.25
USP54-205ENST00000424265 UBL5Q9BZL1 73 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 HTN1P15515 57 aa7.27□□□□□ -1.25
USP54-205ENST00000424265 GAS8-AS1O95177 125 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 IGLV2-11P01706 119 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 ADARB2-AS1A8MUL3 147 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 IGKV3-20P01619 116 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 CRIP1P50238 77 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 SLURP1P55000 103 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 IGKV1D-37A0A075B6S9 117 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 COX7A2LO14548 114 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 C14orf132Q9NPU4 83 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 ATP5EP2Q5VTU8 51 aa7.26□□□□□ -1.25
USP54-205ENST00000424265 CD28P10747 220 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 UPK3BQ9BT76 320 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 CSPG4Q6UVK1 2322 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 SDHAF1A6NFY7 115 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 IGHV3OR16-12A0A075B7B8 117 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 USP24Q9UPU5 2620 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 DEFB104AQ8WTQ1 72 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 LINC00474Q9P2X8 69 aa7.25□□□□□ -1.25
USP54-205ENST00000424265 NDUFA12Q9UI09 145 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 LINC01600Q96MT4 127 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 CCKP06307 115 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 A0A0J9YXY3 114 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 A8MZ25 164 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 TRIOO75962 3097 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 UBE2L6O14933 153 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 DEFB136Q30KP8 78 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 DCANP1Q8TF63 244 aa7.24□□□□□ -1.25
USP54-205ENST00000424265 DSCAML1Q8TD84 2053 aa7.23□□□□□ -1.25
USP54-205ENST00000424265 MRPL36Q9P0J6 103 aaKnown RBP7.23□□□□□ -1.25
USP54-205ENST00000424265 TRAV7A0A075B6U4 112 aa7.23□□□□□ -1.25
USP54-205ENST00000424265 ENHOQ6UWT2 76 aa7.23□□□□□ -1.25
USP54-205ENST00000424265 TRBV12-3P01733 135 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 PRR15Q8IV56 129 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 F6UB75 175 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 MIAQ16674 131 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 ZFAND3Q9H8U3 227 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 VCYO14598 125 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 TSPEAR-AS2P59090 65 aa7.22□□□□□ -1.25
USP54-205ENST00000424265 SMR3AQ99954 134 aa7.21□□□□□ -1.26
USP54-205ENST00000424265 IGLV2-18A0A075B6J9 118 aa7.21□□□□□ -1.26
USP54-205ENST00000424265 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.21□□□□□ -1.26
USP54-205ENST00000424265 CRPP02741 224 aa7.21□□□□□ -1.26
USP54-205ENST00000424265 FASNP49327 2511 aaKnown RBP7.21□□□□□ -1.26
USP54-205ENST00000424265 NRACQ8N912 160 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 Q9HAA7 133 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 KLK9Q2XQG4 91 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 RPL39LQ96EH5 51 aaKnown RBP7.2□□□□□ -1.26
USP54-205ENST00000424265 KLK9Q9UKQ9 250 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 C9orf47Q6ZRZ4 202 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 WFDC9Q8NEX5 89 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 SPTSSBQ8NFR3 76 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 RMI2Q96E14 147 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 IGHV1-58A0A0C4DH39 117 aa7.2□□□□□ -1.26
USP54-205ENST00000424265 UNQ9165/PRO28630Q6UXU0 137 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 VPREB1P12018 145 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 FUSP35637 526 aaKnown RBP eCLIP7.19□□□□□ -1.26
USP54-205ENST00000424265 CFHR3Q02985 330 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 UNC80Q8N2C7 3258 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 TRGV2A0A075B6R0 118 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 IGHV1OR15-1A0A075B7D0 117 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 KRTAP1-3Q8IUG1 177 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 TMEM61Q8N0U2 210 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 TIMM17AQ99595 171 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 REV3LO60673 3130 aa7.19□□□□□ -1.26
USP54-205ENST00000424265 LYRM9A8MSI8 78 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 FAM222AQ5U5X8 452 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 DGAT2L7PQ6IED9 249 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 ARHGAP32A7KAX9 2087 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 DEFB114Q30KQ6 69 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 FP248Q71RG6 208 aaPredicted RBP7.18□□□□□ -1.26
USP54-205ENST00000424265 H3BS24 57 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 HAMPP81172 84 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 MRGPRG-AS1Q2M3A8 158 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 IGFL4Q6B9Z1 124 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 UBE2BP63146 152 aa7.18□□□□□ -1.26
USP54-205ENST00000424265 IGLV4-69A0A075B6H9 119 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 AKAP13Q12802 2813 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 OXLD1Q5BKU9 147 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 K7EQG2 157 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 ANKRD17O75179 2603 aaKnown RBP7.17□□□□□ -1.26
USP54-205ENST00000424265 TNCP24821 2201 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 A0A0J9YX75 114 aa7.17□□□□□ -1.26
USP54-205ENST00000424265 MIFP14174 115 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 RPL39P62891 51 aaKnown RBP7.16□□□□□ -1.26
USP54-205ENST00000424265 ESRGQ1W209 222 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 UBE2D4Q9Y2X8 147 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 ZNF80P51504 273 aaPredicted RBP7.16□□□□□ -1.26
USP54-205ENST00000424265 PROK1P58294 105 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 LINC00846Q9NV44 126 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 H7BZZ5 65 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 SPINK13Q1W4C9 94 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 FAM74A4Q5TZK3 123 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms