RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ISOC2Q96AB3 205 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 RPL39LQ96EH5 51 aaKnown RBP5.04□□□□□ -1.6
VIM-202ENST00000421459 PGLYRP4Q96LB8 373 aa5.04□□□□□ -1.6
VIM-202ENST00000421459 MUC2Q02817 5179 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 A0A0J9YXV3 536 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 C7orf77A4D0Y5 90 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 K7EN84 100 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 FOXI1Q12951 378 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 CFAP161Q6P656 301 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 TMEM242Q9NWH2 141 aa5.03□□□□□ -1.6
VIM-202ENST00000421459 GAS8-AS1O95177 125 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 XCL1P47992 114 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 RPS20P60866 119 aaKnown RBP5.02□□□□□ -1.61
VIM-202ENST00000421459 SRSF9Q13242 221 aaKnown RBP eCLIP5.02□□□□□ -1.61
VIM-202ENST00000421459 TWIST1Q15672 202 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 ADIRFQ15847 76 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 RNASEKQ6P5S7 137 aaKnown RBP5.02□□□□□ -1.61
VIM-202ENST00000421459 FAM231DQ6ZW35 169 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 NUDT10Q8NFP7 164 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 NUDT11Q96G61 164 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 CTDSP1Q9GZU7 261 aa5.02□□□□□ -1.61
VIM-202ENST00000421459 GVQW2A0A096LPI5 108 aaPredicted RBP5.01□□□□□ -1.61
VIM-202ENST00000421459 F2Z2F3 143 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 MT-ND4LP03901 98 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 TRGC1P0CF51 173 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 FGF6P10767 208 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 AMMECR1LQ6DCA0 310 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 SPINK6Q6UWN8 80 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 ANAPC16Q96DE5 110 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 BIN3Q9NQY0 253 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 OSTCQ9NRP0 149 aa5.01□□□□□ -1.61
VIM-202ENST00000421459 FAM231BA6NCW3 169 aa5□□□□□ -1.61
VIM-202ENST00000421459 PPP1R2P9O14990 202 aa5□□□□□ -1.61
VIM-202ENST00000421459 CCL25O15444 150 aa5□□□□□ -1.61
VIM-202ENST00000421459 SCO1O75880 301 aa5□□□□□ -1.61
VIM-202ENST00000421459 YPEL4Q96NS1 127 aa5□□□□□ -1.61
VIM-202ENST00000421459 IMMP2LQ96T52 175 aa5□□□□□ -1.61
VIM-202ENST00000421459 RNASE7Q9H1E1 156 aaKnown RBP5□□□□□ -1.61
VIM-202ENST00000421459 RPS10P5Q9NQ39 176 aa5□□□□□ -1.61
VIM-202ENST00000421459 SMCO4Q9NRQ5 59 aa5□□□□□ -1.61
VIM-202ENST00000421459 LINC00959A0A1B0GUT2 108 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 A0A1W2PNN7 141 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 XKRY2A2RUG3 117 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 APCSP02743 223 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 CTRLP40313 264 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 GAGE2BQ13066 116 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 CT83Q5H943 113 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 REG3GQ6UW15 175 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 CBLN2Q8IUK8 224 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 OR5A1Q8NGJ0 315 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 V9GYV3 84 aa4.99□□□□□ -1.61
VIM-202ENST00000421459 SDHAF1A6NFY7 115 aa4.98□□□□□ -1.61
VIM-202ENST00000421459 Q6ZRP5 223 aa4.98□□□□□ -1.61
VIM-202ENST00000421459 CARD19Q96LW7 228 aa4.98□□□□□ -1.61
VIM-202ENST00000421459 TRBV24-1A0A075B6N3 115 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 TRAV9-1A0A075B6T8 112 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 IGHV1-58A0A0C4DH39 117 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 SMIM27A0A1W2PRY6 76 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 COLCA2A8K830 154 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 TSHBP01222 138 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 PMCHP20382 165 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 PTTG1IPP53801 180 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 SYCNQ0VAF6 134 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 CNFNQ9BYD5 112 aa4.97□□□□□ -1.61
VIM-202ENST00000421459 RPP21Q9H633 154 aaKnown RBP4.97□□□□□ -1.61
VIM-202ENST00000421459 IGLV4-69A0A075B6H9 119 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 H7C423 109 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 I3L3M4 83 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 ZNF561-AS1K7EIQ3 104 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 GATCO43716 136 aaKnown RBP4.96□□□□□ -1.62
VIM-202ENST00000421459 NCR2O95944 276 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 ESDP10768 282 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 RNASE13Q5GAN3 156 aaKnown RBP4.96□□□□□ -1.62
VIM-202ENST00000421459 PHF5AQ7RTV0 110 aaKnown RBP4.96□□□□□ -1.62
VIM-202ENST00000421459 TSKUQ8WUA8 353 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 TMEM101Q96IK0 257 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 LINC00474Q9P2X8 69 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 PSORS1C2Q9UIG4 136 aa4.96□□□□□ -1.62
VIM-202ENST00000421459 A8MWL6 223 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 S100PP25815 95 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 CAMPP49913 170 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 SS18Q15532 418 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 C9orf116Q5BN46 136 aaPredicted RBP4.95□□□□□ -1.62
VIM-202ENST00000421459 CD164L2Q6UWJ8 174 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 KRTAP11-1Q8IUC1 163 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 PRR26Q8N8Z3 221 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 BTF3L4Q96K17 158 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 OPRPNQ99935 248 aaPredicted RBP4.95□□□□□ -1.62
VIM-202ENST00000421459 CDC42SE2Q9NRR3 84 aa4.95□□□□□ -1.62
VIM-202ENST00000421459 TGIF2-C20orf24A0A0A6YYL0 155 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 LOC107984640A0A0U1RRK4 108 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 SMKR1H3BMG3 65 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.94□□□□□ -1.62
VIM-202ENST00000421459 ZNF25P17030 456 aaPredicted RBP4.94□□□□□ -1.62
VIM-202ENST00000421459 SMIM15Q7Z3B0 74 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 ZNF664Q8N3J9 261 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 NUP35Q8NFH5 326 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 NAT8BQ9UHF3 227 aa4.94□□□□□ -1.62
VIM-202ENST00000421459 TRBV6-5A0A0K0K1A5 114 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 FAM168BA1KXE4 195 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms