RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 LINC00467Q9BRT7 94 aa6.91□□□□□ -1.3
COL28A1-201ENST00000399429 OTOGLQ3ZCN5 2332 aa6.91□□□□□ -1.3
COL28A1-201ENST00000399429 A0A0J9YX75 114 aa6.91□□□□□ -1.3
COL28A1-201ENST00000399429 LY6LH3BQJ8 138 aa6.91□□□□□ -1.3
COL28A1-201ENST00000399429 PRB2P02812 416 aaPredicted RBP6.91□□□□□ -1.3
COL28A1-201ENST00000399429 GRNP28799 593 aaKnown RBP6.9□□□□□ -1.3
COL28A1-201ENST00000399429 COX7B2Q8TF08 81 aa6.9□□□□□ -1.3
COL28A1-201ENST00000399429 TRBV6-5A0A0K0K1A5 114 aa6.9□□□□□ -1.31
COL28A1-201ENST00000399429 DPH3Q96FX2 82 aa6.9□□□□□ -1.31
COL28A1-201ENST00000399429 U3KQE9 123 aa6.9□□□□□ -1.31
COL28A1-201ENST00000399429 NDUFA1O15239 70 aa6.9□□□□□ -1.31
COL28A1-201ENST00000399429 BLCAPP62952 87 aa6.9□□□□□ -1.31
COL28A1-201ENST00000399429 PIEZO1Q92508 2521 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 COL4A2P08572 1712 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 A0A1W2PRX2 142 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 INSP01308 110 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 JMJD7-PLA2G4BH0Y9G9 81 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 CRYGAP11844 174 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 C11orf44Q8N8P7 122 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 FRYLO94915 3013 aa6.89□□□□□ -1.31
COL28A1-201ENST00000399429 RPL35AP18077 110 aaKnown RBP6.88□□□□□ -1.31
COL28A1-201ENST00000399429 MRPS36P82909 103 aaKnown RBP6.88□□□□□ -1.31
COL28A1-201ENST00000399429 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
COL28A1-201ENST00000399429 ZFP36P26651 326 aaKnown RBP6.88□□□□□ -1.31
COL28A1-201ENST00000399429 DSPP15924 2871 aaKnown RBP6.88□□□□□ -1.31
COL28A1-201ENST00000399429 ZNF462Q96JM2 2506 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 TRANK1O15050 2925 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 PF4P02776 101 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 C5orf56Q8N8D9 126 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 PRM2P04554 102 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 XCL1P47992 114 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 IGFL2Q6UWQ7 119 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 HTN3P15516 51 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 TLN2Q9Y4G6 2542 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 EBI3Q14213 229 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 C1orf195Q5TG92 126 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 Q6JHZ5 121 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 LINC00846Q9NV44 126 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 PYGO1Q9Y3Y4 419 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 HIVEP3Q5T1R4 2406 aa6.87□□□□□ -1.31
COL28A1-201ENST00000399429 RPS28P62857 69 aaKnown RBP6.86□□□□□ -1.31
COL28A1-201ENST00000399429 SCXQ7RTU7 201 aa6.86□□□□□ -1.31
COL28A1-201ENST00000399429 TIMM17BO60830 172 aa6.86□□□□□ -1.31
COL28A1-201ENST00000399429 HILS1P60008 231 aa6.86□□□□□ -1.31
COL28A1-201ENST00000399429 PIP4P1Q86T03 277 aa6.86□□□□□ -1.31
COL28A1-201ENST00000399429 LY6DQ14210 128 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 NCOR2Q9Y618 2525 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 ODF3BA8MYP8 253 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 NDUFC2-KCTD14E9PQ53 114 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 SMIM11BQ8TCY0 68 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 SMCR5Q8TEV8 140 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 TMEM256-PLSCR3K7ERE1 68 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 SS18Q15532 418 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 Q8N2B8 174 aa6.85□□□□□ -1.31
COL28A1-201ENST00000399429 IGFL3Q6UXB1 125 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 APRG1Q8IVJ8 170 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 NAV2Q8IVL1 2488 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 RAI1Q7Z5J4 1906 aaPredicted RBP6.84□□□□□ -1.31
COL28A1-201ENST00000399429 FN1P02751 2386 aaKnown RBP6.84□□□□□ -1.31
COL28A1-201ENST00000399429 F8WEM9 126 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 DEFB130BP0DP73 79 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 DEFB130AP0DP74 79 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 FAM19A1Q7Z5A9 133 aa6.84□□□□□ -1.31
COL28A1-201ENST00000399429 TNFRSF13BO14836 293 aaPredicted RBP6.84□□□□□ -1.32
COL28A1-201ENST00000399429 UBE2D4Q9Y2X8 147 aa6.84□□□□□ -1.32
COL28A1-201ENST00000399429 A0A087WYN8 130 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 IGF2RP11717 2491 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 SMIM26A0A096LP01 95 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 KLLNB2CW77 178 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 SOSTDC1Q6X4U4 206 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 PRO0628Q9UI54 55 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 HIVEP2P31629 2446 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 MYO15AQ9UKN7 3530 aa6.83□□□□□ -1.32
COL28A1-201ENST00000399429 DCANP1Q8TF63 244 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 CEP295Q9C0D2 2601 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 A0A096LPF7 62 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 AMELXQ99217 191 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 WDFY4Q6ZS81 3184 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 USP9YO00507 2555 aaPredicted RBP6.82□□□□□ -1.32
COL28A1-201ENST00000399429 J3QLI3 93 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 DEFB136Q30KP8 78 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 FAM222AQ5U5X8 452 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 NOP10Q9NPE3 64 aaKnown RBP6.82□□□□□ -1.32
COL28A1-201ENST00000399429 SERP1Q9Y6X1 66 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 KIF25-AS1Q9Y6Z4 181 aa6.82□□□□□ -1.32
COL28A1-201ENST00000399429 ATP5EP2Q5VTU8 51 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 COX6A2Q02221 97 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 FAM19A4Q96LR4 140 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 USP9XQ93008 2570 aaPredicted RBP6.81□□□□□ -1.32
COL28A1-201ENST00000399429 LINC00315P59091 139 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 SIRPDQ9H106 197 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 C9orf85Q96MD7 179 aa6.81□□□□□ -1.32
COL28A1-201ENST00000399429 Q8N6K4 173 aa6.8□□□□□ -1.32
COL28A1-201ENST00000399429 EDN2P20800 178 aa6.8□□□□□ -1.32
COL28A1-201ENST00000399429 LINC00242Q5T6M2 205 aa6.8□□□□□ -1.32
COL28A1-201ENST00000399429 FAM218AQ96MZ4 157 aa6.8□□□□□ -1.32
COL28A1-201ENST00000399429 EIF4EBP3O60516 100 aaPredicted RBP6.79□□□□□ -1.32
COL28A1-201ENST00000399429 IGLV10-54A0A075B6I4 117 aa6.79□□□□□ -1.32
COL28A1-201ENST00000399429 K7EQD1 137 aa6.79□□□□□ -1.32
COL28A1-201ENST00000399429 IGHV4-38-2P0DP08 117 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms