RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TEX261Q6UWH6 196 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 CD164L2Q6UWJ8 174 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 DIRC1Q969H9 104 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 MANBALQ9NQG1 85 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 BIN3Q9NQY0 253 aa8.45□□□□□ -1.06
VPS29-201ENST00000360579 A0A1W2PNN7 141 aa8.44□□□□□ -1.06
VPS29-201ENST00000360579 CTRLP40313 264 aa8.44□□□□□ -1.06
VPS29-201ENST00000360579 GNG4P50150 75 aa8.44□□□□□ -1.06
VPS29-201ENST00000360579 EIF5AP63241 154 aaKnown RBP8.44□□□□□ -1.06
VPS29-201ENST00000360579 EIF5AL1Q6IS14 154 aaKnown RBP8.44□□□□□ -1.06
VPS29-201ENST00000360579 CNFNQ9BYD5 112 aa8.44□□□□□ -1.06
VPS29-201ENST00000360579 FAT4Q6V0I7 4981 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 IGLV4-69A0A075B6H9 119 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 SDHAF1A6NFY7 115 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 CCL20P78556 96 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 SMIM15Q7Z3B0 74 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 PRR26Q8N8Z3 221 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 FAM210AQ96ND0 272 aa8.43□□□□□ -1.06
VPS29-201ENST00000360579 I3L3M4 83 aa8.42□□□□□ -1.06
VPS29-201ENST00000360579 APOMO95445 188 aa8.42□□□□□ -1.06
VPS29-201ENST00000360579 MALP21145 153 aa8.42□□□□□ -1.06
VPS29-201ENST00000360579 C9orf116Q5BN46 136 aaPredicted RBP8.42□□□□□ -1.06
VPS29-201ENST00000360579 RPL39LQ96EH5 51 aaKnown RBP8.42□□□□□ -1.06
VPS29-201ENST00000360579 IGLV1-50A0A075B6I6 118 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 G3V3Q6 166 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 PMCHP20382 165 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 NUP35Q8NFH5 326 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 TSKUQ8WUA8 353 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 MRAP2Q96G30 205 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 CAMK2N2Q96S95 79 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 GNG13Q9P2W3 67 aa8.41□□□□□ -1.06
VPS29-201ENST00000360579 IGLV7-43P04211 117 aa8.4□□□□□ -1.06
VPS29-201ENST00000360579 BCL2P10415 239 aa8.4□□□□□ -1.06
VPS29-201ENST00000360579 ZNF345Q14585 488 aa8.4□□□□□ -1.06
VPS29-201ENST00000360579 CDC42SE2Q9NRR3 84 aa8.4□□□□□ -1.06
VPS29-201ENST00000360579 RAB19A4D1S5 217 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 H0Y9J4 135 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 COX7A2LO14548 114 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 ESDP10768 282 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 RPL18AQ02543 176 aaKnown RBP8.39□□□□□ -1.07
VPS29-201ENST00000360579 PRR4Q16378 134 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 MRPL52Q86TS9 123 aaKnown RBP8.39□□□□□ -1.07
VPS29-201ENST00000360579 C2orf48Q96LS8 159 aa8.39□□□□□ -1.07
VPS29-201ENST00000360579 TRBV6-5A0A0K0K1A5 114 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 C1orf196B1AJZ1 125 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.38□□□□□ -1.07
VPS29-201ENST00000360579 PDE6DO43924 150 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 MEF2BQ02080 365 aaPredicted RBP8.38□□□□□ -1.07
VPS29-201ENST00000360579 PHF5AQ7RTV0 110 aaKnown RBP8.38□□□□□ -1.07
VPS29-201ENST00000360579 NUDT10Q8NFP7 164 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 NUDT11Q96G61 164 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 KRTAP4-7Q9BYR0 210 aa8.38□□□□□ -1.07
VPS29-201ENST00000360579 TRAV1-1A0A0B4J248 108 aa8.37□□□□□ -1.07
VPS29-201ENST00000360579 TEX46H3BTG2 121 aa8.37□□□□□ -1.07
VPS29-201ENST00000360579 BCL2L11O43521 198 aa8.37□□□□□ -1.07
VPS29-201ENST00000360579 RPP21Q9H633 154 aaKnown RBP8.37□□□□□ -1.07
VPS29-201ENST00000360579 TRBV20OR9-2A0A075B6H5 130 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 A0A087WZ39 114 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 TSHBP01222 138 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 RPL13AP40429 203 aaKnown RBP8.36□□□□□ -1.07
VPS29-201ENST00000360579 UBE2D1P51668 147 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 RNF151Q2KHN1 245 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 ST20Q9HBF5 79 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 MED9Q9NWA0 146 aa8.36□□□□□ -1.07
VPS29-201ENST00000360579 KANTRA0A1W2PQU2 76 aa8.35□□□□□ -1.07
VPS29-201ENST00000360579 C7orf77A4D0Y5 90 aa8.35□□□□□ -1.07
VPS29-201ENST00000360579 SMAGPQ0VAQ4 97 aa8.35□□□□□ -1.07
VPS29-201ENST00000360579 TMEM242Q9NWH2 141 aa8.35□□□□□ -1.07
VPS29-201ENST00000360579 FOXA3P55318 350 aaPredicted RBP8.34□□□□□ -1.07
VPS29-201ENST00000360579 IMMP2LQ96T52 175 aa8.33□□□□□ -1.08
VPS29-201ENST00000360579 OPRPNQ99935 248 aaPredicted RBP8.33□□□□□ -1.08
VPS29-201ENST00000360579 RNASE7Q9H1E1 156 aaKnown RBP8.33□□□□□ -1.08
VPS29-201ENST00000360579 CSDC2Q9Y534 153 aaKnown RBP8.33□□□□□ -1.08
VPS29-201ENST00000360579 TRBV27A0A0K0K1C4 114 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 HMSDA8MTL9 139 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 F8WDY8 70 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 KRTAP1-4P0C5Y4 121 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 SPAG11BQ08648 103 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 OR10D4PQ8NGN7 298 aa8.32□□□□□ -1.08
VPS29-201ENST00000360579 SMLR1H3BR10 107 aa8.31□□□□□ -1.08
VPS29-201ENST00000360579 POLR2KP53803 58 aaKnown RBP8.31□□□□□ -1.08
VPS29-201ENST00000360579 LCE1DQ5T752 114 aa8.31□□□□□ -1.08
VPS29-201ENST00000360579 MRPL35Q9NZE8 188 aaKnown RBP8.31□□□□□ -1.08
VPS29-201ENST00000360579 TRAV13-1A0A0B4J241 112 aa8.3□□□□□ -1.08
VPS29-201ENST00000360579 C5orf38Q86SI9 138 aa8.3□□□□□ -1.08
VPS29-201ENST00000360579 BORCS7Q96B45 105 aa8.3□□□□□ -1.08
VPS29-201ENST00000360579 CARHSP1Q9Y2V2 147 aaKnown RBP8.3□□□□□ -1.08
VPS29-201ENST00000360579 A8MWL6 223 aa8.29□□□□□ -1.08
VPS29-201ENST00000360579 FCER1GP30273 86 aa8.29□□□□□ -1.08
VPS29-201ENST00000360579 TAGLN2P37802 199 aaKnown RBP8.29□□□□□ -1.08
VPS29-201ENST00000360579 K7EN84 100 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 VCYO14598 125 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 NDUFA1O15239 70 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 TLX1NBP0CAT3 122 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 UBE2BP63146 152 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 TMEM241Q24JQ0 296 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 FAM19A5Q7Z5A7 132 aaPredicted RBP8.28□□□□□ -1.08
VPS29-201ENST00000360579 KRTAP11-1Q8IUC1 163 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 OCC1Q8TAD7 63 aa8.28□□□□□ -1.08
VPS29-201ENST00000360579 UBE2D4Q9Y2X8 147 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms