RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 NACAE9PAV3 2078 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 USF3Q68DE3 2245 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 IGLV1-40P01703 118 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 LINC01006Q8NI28 216 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 CRIP1P50238 77 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 Q6JHZ5 121 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 WFDC13Q8IUB5 93 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 OBSL1O75147 1896 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 PPDPFQ9H3Y8 114 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 A6NED7 52 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 NRACQ8N912 160 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 MRPS12O15235 138 aaKnown RBP4.75□□□□□ -1.65
UPF2-201ENST00000356352 LY6G6CO95867 125 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 MAPKAPK5-AS1Q8N8E1 139 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 CLUHP3Q96NS8 147 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 CACNA1BQ00975 2339 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 RNASE3P12724 160 aaKnown RBP4.75□□□□□ -1.65
UPF2-201ENST00000356352 C1orf229Q6ZS94 237 aaPredicted RBP4.75□□□□□ -1.65
UPF2-201ENST00000356352 IGLV2-11P01706 119 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 SMIM11BQ8TCY0 68 aa4.75□□□□□ -1.65
UPF2-201ENST00000356352 IGLV2-18A0A075B6J9 118 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 IGLV9-49A0A0B4J1Y8 123 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 PROK1P58294 105 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 ZNF295-AS1Q8N0V1 137 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 EGFEM1PQ0D2K5 195 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 MALRD1Q5VYJ5 2156 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 ABCA4P78363 2273 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 POLEQ07864 2286 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 HRCT1Q6UXD1 115 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 DENND4CQ5VZ89 1909 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 POLR2KP53803 58 aaKnown RBP4.74□□□□□ -1.65
UPF2-201ENST00000356352 ACACAQ13085 2346 aa4.74□□□□□ -1.65
UPF2-201ENST00000356352 DIDO1Q9BTC0 2240 aaKnown RBP4.73□□□□□ -1.65
UPF2-201ENST00000356352 COX7CP15954 63 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 COL6A6A6NMZ7 2263 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 A0A0J9YWU9 116 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 Q6ZVQ6 151 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 DOCK7Q96N67 2140 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 M0R2N4 97 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 WISP2O76076 250 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 CDC42SE2Q9NRR3 84 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 REG3GQ6UW15 175 aa4.73□□□□□ -1.65
UPF2-201ENST00000356352 RPL37AP8A6NKH3 93 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 M0QXV9 152 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 DYSFO75923 2080 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 KIF26AQ9ULI4 1882 aaPredicted RBP4.72□□□□□ -1.65
UPF2-201ENST00000356352 Q6ZPA2 131 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 COL4A3Q01955 1670 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 C10orf99Q6UWK7 81 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 SNURFQ9Y675 71 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 LOC100131303A0A0U1RQF7 123 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 CNFNQ9BYD5 112 aa4.72□□□□□ -1.65
UPF2-201ENST00000356352 CYSRT1A8MQ03 144 aa4.71□□□□□ -1.65
UPF2-201ENST00000356352 CRIP3Q6Q6R5 217 aa4.71□□□□□ -1.65
UPF2-201ENST00000356352 NANOS2P60321 138 aaKnown RBP4.71□□□□□ -1.66
UPF2-201ENST00000356352 Q6Q795 121 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 PKDREJQ9NTG1 2253 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 LTBP2Q14767 1821 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 FAM30AQ9NZY2 134 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 SPTBN1Q01082 2364 aaKnown RBP4.71□□□□□ -1.66
UPF2-201ENST00000356352 TRAV7A0A075B6U4 112 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 IGHV4-30-4P0DP06 118 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 ESRGQ1W209 222 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 PRR9Q5T870 116 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 NTM-AS1Q6ZSK4 140 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 WFDC10AQ9H1F0 79 aa4.71□□□□□ -1.66
UPF2-201ENST00000356352 ADAMTS9Q9P2N4 1935 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 FSHBP01225 129 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 DOCK10Q96BY6 2186 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 CHD3Q12873 2000 aaKnown RBP4.7□□□□□ -1.66
UPF2-201ENST00000356352 IGLV5-52A0A0A0MRZ9 124 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 A8MZ25 164 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 SMIM26A0A096LP01 95 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 C22orf34Q6ZV56 151 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 A0A0U1RQV1 116 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 CRIP2P52943 208 aaPredicted RBP4.7□□□□□ -1.66
UPF2-201ENST00000356352 C1orf137Q5JT78 98 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 ZNF580Q9UK33 172 aa4.7□□□□□ -1.66
UPF2-201ENST00000356352 CNOT1A5YKK6 2376 aaKnown RBP4.69□□□□□ -1.66
UPF2-201ENST00000356352 LINC01561Q8N1V8 128 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 Q8N814 137 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 YPEL4Q96NS1 127 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 C16orf95Q9H693 158 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 GTF3C1Q12789 2109 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 PRYO14603 147 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 BRI3O95415 125 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 PLA2G2AP14555 144 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 C2orf91Q6ZV80 131 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 LINC00526Q96FQ7 95 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 C11orf21Q9P2W6 132 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 ZNF106Q9H2Y7 1883 aaKnown RBP4.69□□□□□ -1.66
UPF2-201ENST00000356352 NOTCH4Q99466 2003 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 C18orf65Q6ZTR6 163 aa4.69□□□□□ -1.66
UPF2-201ENST00000356352 MED13Q9UHV7 2174 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 IGIPA6NJ69 53 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 C2orf48Q96LS8 159 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 LIMD2Q9BT23 127 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 CSDC2Q9Y534 153 aaKnown RBP4.68□□□□□ -1.66
UPF2-201ENST00000356352 CADP27708 2225 aa4.68□□□□□ -1.66
UPF2-201ENST00000356352 LINC00242Q5T6M2 205 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms