RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SPATA45Q537H7 98 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 PSMG4Q5JS54 123 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 SPANXN1Q5VSR9 72 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 MRAP2Q96G30 205 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TMEM208Q9BTX3 173 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TMEM70Q9BUB7 260 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 SMIM2Q9BVW6 85 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 A0A1B0GUV1 79 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 H3BVH4 76 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 ORMDL3Q8N138 153 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 C14orf178Q8N769 122 aaPredicted RBP1.59□□□□□ -2.15
VPS54-202ENST00000354504 OR11H1Q8NG94 326 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 PRELID3AQ96N28 172 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 C20orf78Q9BR46 151 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 ST20Q9HBF5 79 aa1.59□□□□□ -2.15
VPS54-202ENST00000354504 TGP01266 2768 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 A0A087WX48 190 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 A0A0G2JLM5 398 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 C20orf202A1L168 122 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 K7EMI3 77 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 CKS2P33552 79 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 EMP1P54849 157 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 RPS20P60866 119 aaKnown RBP1.59□□□□□ -2.16
VPS54-202ENST00000354504 RPL39P62891 51 aaKnown RBP1.59□□□□□ -2.16
VPS54-202ENST00000354504 MPV17L2Q567V2 206 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 Q8NDZ9 215 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 TMEM158Q8WZ71 300 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 HIGD1BQ9P298 99 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D4Q9Y2X8 147 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 PYGO1Q9Y3Y4 419 aa1.59□□□□□ -2.16
VPS54-202ENST00000354504 LPAP08519 4548 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-73A0A0B4J1V6 119 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV12-3A0A0B4J271 114 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KNCNA6PVL3 124 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TCAPO15273 167 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SIVA1O15304 175 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DUSP14O95147 198 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 MGPP08493 103 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 UBE2D1P51668 147 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 CACNG7P62955 275 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 EGFEM1PQ0D2K5 195 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SPINK13Q1W4C9 94 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 ERASQ7Z444 233 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KLHL30-AS1Q8NEE0 82 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 WFDC9Q8NEX5 89 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OR10J6PQ8NGY7 276 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PLEKHB2Q96CS7 222 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 IGLV4-3A0A075B6K6 122 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV8-6A0A0B4J262 113 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 LOC100131303A0A0U1RQF7 123 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TSTD3H0UI37 97 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 HBDP02042 147 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MT3P25713 68 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 BMI1P35226 326 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 CDKN1BP46527 198 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MRPS36P82909 103 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 DEFA6Q01524 100 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 COX6A2Q02221 97 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 KRTAP24-1Q3LI83 254 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DYNLRB2Q8TF09 96 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OPRPNQ99935 248 aaPredicted RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 C1QTNF4Q9BXJ3 329 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 ZMAT5Q9UDW3 170 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 PHLDA3Q9Y5J5 127 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 LRP1Q07954 4544 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 A0A087X002 238 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV25A0A0B4J276 109 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TRAV21A0A0B4J279 112 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TMEM223A0PJW6 202 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PPBPP02775 128 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 PRSS1P07477 247 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DEFB131AP59861 70 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 RBX1P62877 108 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 DAZ2Q13117 558 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 SRSF9Q13242 221 aaKnown RBP eCLIP1.58□□□□□ -2.16
VPS54-202ENST00000354504 RIGQ13278 110 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 FAM159AQ6UWV7 190 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 Q6ZRP5 223 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 FA2HQ7L5A8 372 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 SMIM15Q7Z3B0 74 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 NEGR1Q7Z3B1 354 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 C10orf126Q8N4M7 172 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 Q8NAQ8 132 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 OR1N2Q8NGR9 330 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 C11orf45Q8TAV5 145 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 TIMM17AQ99595 171 aa1.58□□□□□ -2.16
VPS54-202ENST00000354504 MRPL35Q9NZE8 188 aaKnown RBP1.58□□□□□ -2.16
VPS54-202ENST00000354504 A0A0U1RRA0 63 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 C11orf86A6NJI1 115 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 LEPROTL1O95214 131 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGHV3-53P01767 116 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 IGKV2-30P06310 120 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 SMIM17P0DL12 118 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 S100A7P31151 101 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 FXYD2P54710 66 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 SNRPD3P62318 126 aaKnown RBP1.57□□□□□ -2.16
VPS54-202ENST00000354504 STHQ8IWL8 128 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 PPDPFQ9H3Y8 114 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 CST9LQ9H4G1 147 aa1.57□□□□□ -2.16
VPS54-202ENST00000354504 DPH3P1Q9H4G8 78 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms