RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 TRGV1A0A0A0MS02 117 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 RBMY1A1P0DJD3 496 aaKnown RBP9.57□□□□□ -0.88
COL18A1-201ENST00000342220 RBMY1CP0DJD4 496 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 RBMY1FQ15415 496 aaKnown RBP9.57□□□□□ -0.88
COL18A1-201ENST00000342220 OXLD1Q5BKU9 147 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 NTN5Q8WTR8 489 aaPredicted RBP9.57□□□□□ -0.88
COL18A1-201ENST00000342220 ORMDL2Q53FV1 153 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 TOMM6Q96B49 74 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 SPANXA1Q9NS26 97 aa9.57□□□□□ -0.88
COL18A1-201ENST00000342220 RNASE3P12724 160 aaKnown RBP9.56□□□□□ -0.88
COL18A1-201ENST00000342220 FAM19A5Q7Z5A7 132 aaPredicted RBP9.56□□□□□ -0.88
COL18A1-201ENST00000342220 TRAV12-1A0A0B4J245 112 aa9.56□□□□□ -0.88
COL18A1-201ENST00000342220 TRAV8-4A0A0B4J246 113 aa9.56□□□□□ -0.88
COL18A1-201ENST00000342220 P0DMU3 169 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 FAM231AP0DMU4 169 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 FAM231CP0DMU5 169 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 UBE2D3P61077 147 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 UBE2D2P62837 147 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 NEXN-AS1Q8NBZ9 246 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 C2orf66Q6UXQ4 117 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 MUC4Q99102 2169 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 Q6Q795 121 aa9.55□□□□□ -0.88
COL18A1-201ENST00000342220 TRAV2A0A0B4J234 112 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 DEFB130BP0DP73 79 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 DEFB130AP0DP74 79 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 C9orf153Q5TBE3 101 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 BAALCQ8WXS3 180 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 FAM19A4Q96LR4 140 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 C16orf95Q9H693 158 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 EDA2RQ9HAV5 297 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 KLK5Q9Y337 293 aaPredicted RBP9.54□□□□□ -0.88
COL18A1-201ENST00000342220 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 H7C2G1 150 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 TRPT1Q86TN4 253 aaKnown RBP9.54□□□□□ -0.88
COL18A1-201ENST00000342220 C10orf126Q8N4M7 172 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 ADARB2-AS1A8MUL3 147 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 INSP01308 110 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 ODF3Q96PU9 254 aa9.54□□□□□ -0.88
COL18A1-201ENST00000342220 KLLNB2CW77 178 aa9.53□□□□□ -0.88
COL18A1-201ENST00000342220 TRGV2A0A075B6R0 118 aa9.52□□□□□ -0.88
COL18A1-201ENST00000342220 ZNF815PA8K554 130 aa9.52□□□□□ -0.88
COL18A1-201ENST00000342220 NDUFA11Q86Y39 141 aa9.52□□□□□ -0.88
COL18A1-201ENST00000342220 NOP10Q9NPE3 64 aaKnown RBP9.52□□□□□ -0.88
COL18A1-201ENST00000342220 TEX49A0A1B0GTD5 131 aa9.52□□□□□ -0.89
COL18A1-201ENST00000342220 HTN3P15516 51 aa9.52□□□□□ -0.89
COL18A1-201ENST00000342220 KRTAP24-1Q3LI83 254 aa9.52□□□□□ -0.89
COL18A1-201ENST00000342220 SBSPONQ8IVN8 264 aa9.52□□□□□ -0.89
COL18A1-201ENST00000342220 PRADC1Q9BSG0 188 aa9.52□□□□□ -0.89
COL18A1-201ENST00000342220 PLEKHB2Q96CS7 222 aa9.51□□□□□ -0.89
COL18A1-201ENST00000342220 NDUFA7O95182 113 aa9.51□□□□□ -0.89
COL18A1-201ENST00000342220 MED14OSP0DP75 135 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 UBE2D1P51668 147 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 DEFB135Q30KP9 77 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 J3KT08 172 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 LINC00315P59091 139 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 HERVK_113P63121 156 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 Q9UF83 564 aa9.5□□□□□ -0.89
COL18A1-201ENST00000342220 KIF25-AS1Q9Y6Z4 181 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 FAM236AA0A1B0GUQ0 79 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 FAM236BA0A1B0GV22 79 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 CRYGDP07320 174 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 TRGV11A0A075B6L2 103 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 TSHBP01222 138 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 TP53TG1Q9Y2A0 90 aa9.49□□□□□ -0.89
COL18A1-201ENST00000342220 RPL39P62891 51 aaKnown RBP9.48□□□□□ -0.89
COL18A1-201ENST00000342220 SUMO4Q6EEV6 95 aa9.48□□□□□ -0.89
COL18A1-201ENST00000342220 OR13C6PQ8NH95 151 aa9.48□□□□□ -0.89
COL18A1-201ENST00000342220 A0A096LPF7 62 aa9.48□□□□□ -0.89
COL18A1-201ENST00000342220 Q6ZTI0 123 aa9.48□□□□□ -0.89
COL18A1-201ENST00000342220 C11orf86A6NJI1 115 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 NXPH4O95158 308 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 TMEM101Q96IK0 257 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 RNASE13Q5GAN3 156 aaKnown RBP9.47□□□□□ -0.89
COL18A1-201ENST00000342220 PPP1R17O96001 155 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 ZNF415Q09FC8 603 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 POM121L12Q8N7R1 296 aa9.47□□□□□ -0.89
COL18A1-201ENST00000342220 F5H768 121 aa9.46□□□□□ -0.89
COL18A1-201ENST00000342220 WIPF1O43516 503 aa9.46□□□□□ -0.89
COL18A1-201ENST00000342220 PMVKQ15126 192 aa9.46□□□□□ -0.89
COL18A1-201ENST00000342220 MRAPQ8TCY5 172 aa9.46□□□□□ -0.89
COL18A1-201ENST00000342220 IGLV4-69A0A075B6H9 119 aa9.46□□□□□ -0.9
COL18A1-201ENST00000342220 IGKV3OR2-268A0A0C4DH90 116 aa9.46□□□□□ -0.9
COL18A1-201ENST00000342220 SDHAF1A6NFY7 115 aa9.46□□□□□ -0.9
COL18A1-201ENST00000342220 Q1RN00 199 aa9.46□□□□□ -0.9
COL18A1-201ENST00000342220 POLR2KP53803 58 aaKnown RBP9.46□□□□□ -0.9
COL18A1-201ENST00000342220 IGIPA6NJ69 53 aa9.45□□□□□ -0.9
COL18A1-201ENST00000342220 CFC1BP0CG36 223 aa9.45□□□□□ -0.9
COL18A1-201ENST00000342220 CFC1P0CG37 223 aa9.45□□□□□ -0.9
COL18A1-201ENST00000342220 C1orf158Q8N1D5 194 aa9.45□□□□□ -0.9
COL18A1-201ENST00000342220 DEFB121Q5J5C9 76 aa9.44□□□□□ -0.9
COL18A1-201ENST00000342220 CEMP1Q6PRD7 247 aaPredicted RBP9.44□□□□□ -0.9
COL18A1-201ENST00000342220 UBE2WQ96B02 151 aa9.44□□□□□ -0.9
COL18A1-201ENST00000342220 PRO1854Q9UHT4 67 aa9.44□□□□□ -0.9
COL18A1-201ENST00000342220 C9orf66Q5T8R8 295 aa9.44□□□□□ -0.9
COL18A1-201ENST00000342220 VCYO14598 125 aa9.44□□□□□ -0.9
COL18A1-201ENST00000342220 PRIMA1Q86XR5 153 aa9.43□□□□□ -0.9
COL18A1-201ENST00000342220 C3orf22Q8N5N4 141 aa9.43□□□□□ -0.9
COL18A1-201ENST00000342220 HERVK_113P61574 105 aa9.43□□□□□ -0.9
COL18A1-201ENST00000342220 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms