RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HBBP68871 147 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 MRPL51Q4U2R6 128 aaKnown RBP10.52□□□□□ -0.73
LSM1-201ENST00000311351 DGAT2L7PQ6IED9 249 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 ATP5L2Q7Z4Y8 100 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 C9orf163Q8N9P6 203 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 CLRN3Q8NCR9 226 aa10.52□□□□□ -0.73
LSM1-201ENST00000311351 TMEM218A2RU14 115 aa10.51□□□□□ -0.73
LSM1-201ENST00000311351 ZNF25P17030 456 aaPredicted RBP10.51□□□□□ -0.73
LSM1-201ENST00000311351 FAM104BQ5XKR9 115 aa10.51□□□□□ -0.73
LSM1-201ENST00000311351 MRPL54Q6P161 138 aaKnown RBP10.51□□□□□ -0.73
LSM1-201ENST00000311351 COMMD7Q86VX2 200 aa10.51□□□□□ -0.73
LSM1-201ENST00000311351 C15orf56Q8N910 161 aa10.51□□□□□ -0.73
LSM1-201ENST00000311351 CHCHD10Q8WYQ3 142 aaPredicted RBP10.51□□□□□ -0.73
LSM1-201ENST00000311351 HERC1Q15751 4861 aa10.5□□□□□ -0.73
LSM1-201ENST00000311351 C7orf77A4D0Y5 90 aa10.5□□□□□ -0.73
LSM1-201ENST00000311351 BTF3L4Q96K17 158 aa10.5□□□□□ -0.73
LSM1-201ENST00000311351 PANO1I0J062 215 aa10.49□□□□□ -0.73
LSM1-201ENST00000311351 SLPIP03973 132 aa10.49□□□□□ -0.73
LSM1-201ENST00000311351 SUMO2P61956 95 aaKnown RBP10.49□□□□□ -0.73
LSM1-201ENST00000311351 CNBPP62633 177 aaKnown RBP10.49□□□□□ -0.73
LSM1-201ENST00000311351 OR5A1Q8NGJ0 315 aa10.49□□□□□ -0.73
LSM1-201ENST00000311351 TMEM101Q96IK0 257 aa10.49□□□□□ -0.73
LSM1-201ENST00000311351 SEC11CQ9BY50 192 aa10.49□□□□□ -0.73
LSM1-201ENST00000311351 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.49□□□□□ -0.73
LSM1-201ENST00000311351 A0A1B0GXF2 115 aa10.48□□□□□ -0.73
LSM1-201ENST00000311351 LINC00862A6NCI5 91 aa10.48□□□□□ -0.73
LSM1-201ENST00000311351 PLA2G1BP04054 148 aaKnown RBP10.48□□□□□ -0.73
LSM1-201ENST00000311351 FCER1GP30273 86 aa10.48□□□□□ -0.73
LSM1-201ENST00000311351 HIGD2BQ4VC39 106 aa10.48□□□□□ -0.73
LSM1-201ENST00000311351 MRPL52Q86TS9 123 aaKnown RBP10.48□□□□□ -0.73
LSM1-201ENST00000311351 AP5S1Q9NUS5 200 aa10.48□□□□□ -0.73
LSM1-201ENST00000311351 J3QL48 77 aa10.47□□□□□ -0.73
LSM1-201ENST00000311351 VCYO14598 125 aa10.47□□□□□ -0.73
LSM1-201ENST00000311351 XCL1P47992 114 aa10.47□□□□□ -0.73
LSM1-201ENST00000311351 SDIM1Q6ZPB5 146 aa10.47□□□□□ -0.73
LSM1-201ENST00000311351 CTDSP1Q9GZU7 261 aa10.47□□□□□ -0.73
LSM1-201ENST00000311351 LINC00959A0A1B0GUT2 108 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 CCL25O15444 150 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 CKS2P33552 79 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 FOXI1Q12951 378 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 IMMP2LQ96T52 175 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 CDC42SE2Q9NRR3 84 aa10.46□□□□□ -0.73
LSM1-201ENST00000311351 D6R8Y8 96 aa10.45□□□□□ -0.74
LSM1-201ENST00000311351 PPBPP02775 128 aa10.45□□□□□ -0.74
LSM1-201ENST00000311351 ADCYAP1P18509 176 aa10.45□□□□□ -0.74
LSM1-201ENST00000311351 KRTAP10-4P60372 401 aaPredicted RBP10.45□□□□□ -0.74
LSM1-201ENST00000311351 KIR2DL4Q99706 377 aa10.45□□□□□ -0.74
LSM1-201ENST00000311351 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.44□□□□□ -0.74
LSM1-201ENST00000311351 TNFRSF6BO95407 300 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 NPYP01303 97 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 RNASE13Q5GAN3 156 aaKnown RBP10.44□□□□□ -0.74
LSM1-201ENST00000311351 CFAP161Q6P656 301 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 ZNF664Q8N3J9 261 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 C20orf78Q9BR46 151 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 UBE2D4Q9Y2X8 147 aa10.44□□□□□ -0.74
LSM1-201ENST00000311351 IGHV3-64A0A075B6Q5 118 aa10.43□□□□□ -0.74
LSM1-201ENST00000311351 GVQW2A0A096LPI5 108 aaPredicted RBP10.43□□□□□ -0.74
LSM1-201ENST00000311351 TCAPO15273 167 aa10.43□□□□□ -0.74
LSM1-201ENST00000311351 CHTF8P0CG12 524 aa10.43□□□□□ -0.74
LSM1-201ENST00000311351 SMAGPQ0VAQ4 97 aa10.43□□□□□ -0.74
LSM1-201ENST00000311351 TRBV24-1A0A075B6N3 115 aa10.42□□□□□ -0.74
LSM1-201ENST00000311351 PHOX2AO14813 284 aa10.42□□□□□ -0.74
LSM1-201ENST00000311351 Q6ZUT4 128 aa10.42□□□□□ -0.74
LSM1-201ENST00000311351 SMIM2Q9BVW6 85 aa10.42□□□□□ -0.74
LSM1-201ENST00000311351 TRAV9-1A0A075B6T8 112 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 S100PP25815 95 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 RPL32P62910 135 aaKnown RBP10.41□□□□□ -0.74
LSM1-201ENST00000311351 CIRBPQ14011 172 aaKnown RBP10.41□□□□□ -0.74
LSM1-201ENST00000311351 SS18Q15532 418 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 ORMDL3Q8N138 153 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 LINC00526Q96FQ7 95 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 CARHSP1Q9Y2V2 147 aaKnown RBP10.41□□□□□ -0.74
LSM1-201ENST00000311351 PKHD1L1Q86WI1 4243 aa10.41□□□□□ -0.74
LSM1-201ENST00000311351 RPL39P62891 51 aaKnown RBP10.4□□□□□ -0.74
LSM1-201ENST00000311351 RHEBQ15382 184 aa10.4□□□□□ -0.74
LSM1-201ENST00000311351 C10orf91Q5T1B1 145 aa10.4□□□□□ -0.74
LSM1-201ENST00000311351 NDUFA5Q16718 116 aa10.39□□□□□ -0.75
LSM1-201ENST00000311351 CD164L2Q6UWJ8 174 aa10.39□□□□□ -0.75
LSM1-201ENST00000311351 SPACA4Q8TDM5 124 aa10.39□□□□□ -0.75
LSM1-201ENST00000311351 TMEM18Q96B42 140 aa10.39□□□□□ -0.75
LSM1-201ENST00000311351 LAMTOR2Q9Y2Q5 125 aa10.39□□□□□ -0.75
LSM1-201ENST00000311351 CSDC2Q9Y534 153 aaKnown RBP10.39□□□□□ -0.75
LSM1-201ENST00000311351 TRAV13-1A0A0B4J241 112 aa10.38□□□□□ -0.75
LSM1-201ENST00000311351 IGHV1-58A0A0C4DH39 117 aa10.38□□□□□ -0.75
LSM1-201ENST00000311351 RPL37AP61513 92 aaKnown RBP10.38□□□□□ -0.75
LSM1-201ENST00000311351 COX6A2Q02221 97 aa10.38□□□□□ -0.75
LSM1-201ENST00000311351 TMEM136Q6ZRR5 245 aa10.38□□□□□ -0.75
LSM1-201ENST00000311351 PRSS3P2Q8NHM4 247 aa10.38□□□□□ -0.75
LSM1-201ENST00000311351 PRELID3AQ96N28 172 aa10.37□□□□□ -0.75
LSM1-201ENST00000311351 TIMM21Q9BVV7 248 aa10.37□□□□□ -0.75
LSM1-201ENST00000311351 LRP1Q07954 4544 aaKnown RBP10.36□□□□□ -0.75
LSM1-201ENST00000311351 A0A087WYN8 130 aa10.36□□□□□ -0.75
LSM1-201ENST00000311351 FAM104AQ969W3 186 aa10.36□□□□□ -0.75
LSM1-201ENST00000311351 IGKV2-24A0A0C4DH68 120 aa10.35□□□□□ -0.75
LSM1-201ENST00000311351 C1orf196B1AJZ1 125 aa10.35□□□□□ -0.75
LSM1-201ENST00000311351 COX19Q49B96 90 aa10.35□□□□□ -0.75
LSM1-201ENST00000311351 OPRPNQ99935 248 aaPredicted RBP10.35□□□□□ -0.75
LSM1-201ENST00000311351 COX7A2LO14548 114 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 RAB5AP20339 215 aa10.34□□□□□ -0.75
LSM1-201ENST00000311351 HNRNPA3P51991 378 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms