RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 PLA2G1BP04054 148 aaKnown RBP12.7□□□□□ -0.38
PDZRN3-202ENST00000308537 CIRBPQ14011 172 aaKnown RBP12.7□□□□□ -0.38
PDZRN3-202ENST00000308537 ATP5L2Q7Z4Y8 100 aa12.7□□□□□ -0.38
PDZRN3-202ENST00000308537 GAGE12HA6NDE8 117 aa12.69□□□□□ -0.38
PDZRN3-202ENST00000308537 FAM104BQ5XKR9 115 aa12.69□□□□□ -0.38
PDZRN3-202ENST00000308537 hDV102S1A0JD36 115 aa12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 TMEM218A2RU14 115 aa12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 LINC00862A6NCI5 91 aa12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 ZNF25P17030 456 aaPredicted RBP12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 AMMECR1LQ6DCA0 310 aa12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 MRPL54Q6P161 138 aaKnown RBP12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 RNASEKQ6P5S7 137 aaKnown RBP12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 CHCHD10Q8WYQ3 142 aaPredicted RBP12.68□□□□□ -0.38
PDZRN3-202ENST00000308537 IGKV3OR2-268A0A0C4DH90 116 aa12.67□□□□□ -0.38
PDZRN3-202ENST00000308537 MRPL52Q86TS9 123 aaKnown RBP12.67□□□□□ -0.38
PDZRN3-202ENST00000308537 COMMD7Q86VX2 200 aa12.67□□□□□ -0.38
PDZRN3-202ENST00000308537 VCYO14598 125 aa12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 CKS2P33552 79 aa12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 FOXI1Q12951 378 aa12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 MRPL51Q4U2R6 128 aaKnown RBP12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 OR5A1Q8NGJ0 315 aa12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 SEC11CQ9BY50 192 aa12.66□□□□□ -0.38
PDZRN3-202ENST00000308537 CDC42SE2Q9NRR3 84 aa12.65□□□□□ -0.38
PDZRN3-202ENST00000308537 A0A1B0GXF2 115 aa12.64□□□□□ -0.39
PDZRN3-202ENST00000308537 PPBPP02775 128 aa12.64□□□□□ -0.39
PDZRN3-202ENST00000308537 SUMO2P61956 95 aaKnown RBP12.64□□□□□ -0.39
PDZRN3-202ENST00000308537 KIR2DL4Q99706 377 aa12.64□□□□□ -0.39
PDZRN3-202ENST00000308537 CTDSP1Q9GZU7 261 aa12.64□□□□□ -0.39
PDZRN3-202ENST00000308537 LINC00959A0A1B0GUT2 108 aa12.63□□□□□ -0.39
PDZRN3-202ENST00000308537 FCER1GP30273 86 aa12.63□□□□□ -0.39
PDZRN3-202ENST00000308537 SMAGPQ0VAQ4 97 aa12.63□□□□□ -0.39
PDZRN3-202ENST00000308537 BTF3L4Q96K17 158 aa12.63□□□□□ -0.39
PDZRN3-202ENST00000308537 IMMP2LQ96T52 175 aa12.63□□□□□ -0.39
PDZRN3-202ENST00000308537 GVQW2A0A096LPI5 108 aaPredicted RBP12.62□□□□□ -0.39
PDZRN3-202ENST00000308537 C7orf77A4D0Y5 90 aa12.62□□□□□ -0.39
PDZRN3-202ENST00000308537 TCAPO15273 167 aa12.62□□□□□ -0.39
PDZRN3-202ENST00000308537 TMEM101Q96IK0 257 aa12.62□□□□□ -0.39
PDZRN3-202ENST00000308537 C20orf78Q9BR46 151 aa12.62□□□□□ -0.39
PDZRN3-202ENST00000308537 TRBV24-1A0A075B6N3 115 aa12.61□□□□□ -0.39
PDZRN3-202ENST00000308537 KRTAP29-1A8MX34 341 aaPredicted RBP12.61□□□□□ -0.39
PDZRN3-202ENST00000308537 CHTF8P0CG12 524 aa12.61□□□□□ -0.39
PDZRN3-202ENST00000308537 HNRNPA3P51991 378 aaKnown RBP12.61□□□□□ -0.39
PDZRN3-202ENST00000308537 HIGD2BQ4VC39 106 aa12.61□□□□□ -0.39
PDZRN3-202ENST00000308537 PHOX2AO14813 284 aa12.6□□□□□ -0.39
PDZRN3-202ENST00000308537 AP5S1Q9NUS5 200 aa12.6□□□□□ -0.39
PDZRN3-202ENST00000308537 UBE2D4Q9Y2X8 147 aa12.6□□□□□ -0.39
PDZRN3-202ENST00000308537 IGHV3-64A0A075B6Q5 118 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 CCL25O15444 150 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 ADCYAP1P18509 176 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 XCL1P47992 114 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 RPL32P62910 135 aaKnown RBP12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 CFAP161Q6P656 301 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 ORMDL3Q8N138 153 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 ZNF664Q8N3J9 261 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 SPACA4Q8TDM5 124 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 FAM104AQ969W3 186 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 TMEM18Q96B42 140 aa12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 CSDC2Q9Y534 153 aaKnown RBP12.59□□□□□ -0.39
PDZRN3-202ENST00000308537 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.58□□□□□ -0.4
PDZRN3-202ENST00000308537 D6R8Y8 96 aa12.58□□□□□ -0.4
PDZRN3-202ENST00000308537 S100PP25815 95 aa12.58□□□□□ -0.4
PDZRN3-202ENST00000308537 TRAV9-1A0A075B6T8 112 aa12.57□□□□□ -0.4
PDZRN3-202ENST00000308537 TNFRSF6BO95407 300 aa12.57□□□□□ -0.4
PDZRN3-202ENST00000308537 TMEM136Q6ZRR5 245 aa12.57□□□□□ -0.4
PDZRN3-202ENST00000308537 A0A087WYN8 130 aa12.56□□□□□ -0.4
PDZRN3-202ENST00000308537 PRSS3P2Q8NHM4 247 aa12.56□□□□□ -0.4
PDZRN3-202ENST00000308537 LAMTOR2Q9Y2Q5 125 aa12.56□□□□□ -0.4
PDZRN3-202ENST00000308537 RPL37AP61513 92 aaKnown RBP12.55□□□□□ -0.4
PDZRN3-202ENST00000308537 COX6A2Q02221 97 aa12.55□□□□□ -0.4
PDZRN3-202ENST00000308537 CD164L2Q6UWJ8 174 aa12.55□□□□□ -0.4
PDZRN3-202ENST00000308537 NPYP01303 97 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 RHEBQ15382 184 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 NDUFA5Q16718 116 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 RNASE13Q5GAN3 156 aaKnown RBP12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 C10orf91Q5T1B1 145 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 LINC00526Q96FQ7 95 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 PRELID3AQ96N28 172 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 TIMM21Q9BVV7 248 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 SMIM2Q9BVW6 85 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 PLAC8Q9NZF1 115 aa12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 CARHSP1Q9Y2V2 147 aaKnown RBP12.54□□□□□ -0.4
PDZRN3-202ENST00000308537 Q6ZUT4 128 aa12.53□□□□□ -0.4
PDZRN3-202ENST00000308537 IGHV1-58A0A0C4DH39 117 aa12.52□□□□□ -0.41
PDZRN3-202ENST00000308537 RAB5AP20339 215 aa12.52□□□□□ -0.41
PDZRN3-202ENST00000308537 SS18Q15532 418 aa12.52□□□□□ -0.41
PDZRN3-202ENST00000308537 RPL39P62891 51 aaKnown RBP12.51□□□□□ -0.41
PDZRN3-202ENST00000308537 MAP1LC3AQ9H492 121 aa12.51□□□□□ -0.41
PDZRN3-202ENST00000308537 J3QL48 77 aa12.5□□□□□ -0.41
PDZRN3-202ENST00000308537 COX19Q49B96 90 aa12.5□□□□□ -0.41
PDZRN3-202ENST00000308537 RPS10P5Q9NQ39 176 aa12.5□□□□□ -0.41
PDZRN3-202ENST00000308537 A0A096LNI7 61 aa12.49□□□□□ -0.41
PDZRN3-202ENST00000308537 C1orf196B1AJZ1 125 aa12.48□□□□□ -0.41
PDZRN3-202ENST00000308537 PRSS47A8MTI9 375 aa12.47□□□□□ -0.41
PDZRN3-202ENST00000308537 OXTP01178 125 aa12.47□□□□□ -0.41
PDZRN3-202ENST00000308537 SVBPQ8N300 66 aa12.47□□□□□ -0.41
PDZRN3-202ENST00000308537 OPRPNQ99935 248 aaPredicted RBP12.47□□□□□ -0.41
PDZRN3-202ENST00000308537 TRAV13-1A0A0B4J241 112 aa12.46□□□□□ -0.41
PDZRN3-202ENST00000308537 IGKV2-24A0A0C4DH68 120 aa12.46□□□□□ -0.41
PDZRN3-202ENST00000308537 SNAPINO95295 136 aa12.46□□□□□ -0.41
PDZRN3-202ENST00000308537 APOC3P02656 99 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms