RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 A8MZ25 164 aa14.32□□□□□ -0.12
USP48-201ENST00000308271 EPG5Q9HCE0 2579 aa14.31□□□□□ -0.12
USP48-201ENST00000308271 APOC4P55056 127 aa14.31□□□□□ -0.12
USP48-201ENST00000308271 MYO9AB2RTY4 2548 aa14.3□□□□□ -0.12
USP48-201ENST00000308271 PDE6GP18545 87 aa14.3□□□□□ -0.12
USP48-201ENST00000308271 FAM222AQ5U5X8 452 aa14.3□□□□□ -0.12
USP48-201ENST00000308271 LINC01546A6NGU7 62 aa14.3□□□□□ -0.12
USP48-201ENST00000308271 PIK3CD-AS1Q5SR53 167 aa14.3□□□□□ -0.12
USP48-201ENST00000308271 ATP5EP2Q5VTU8 51 aa14.29□□□□□ -0.12
USP48-201ENST00000308271 PROK1P58294 105 aa14.29□□□□□ -0.12
USP48-201ENST00000308271 TSPEAR-AS2P59090 65 aa14.29□□□□□ -0.12
USP48-201ENST00000308271 TLN2Q9Y4G6 2542 aa14.29□□□□□ -0.12
USP48-201ENST00000308271 CRIP2P52943 208 aaPredicted RBP14.29□□□□□ -0.12
USP48-201ENST00000308271 IGLV10-54A0A075B6I4 117 aa14.29□□□□□ -0.12
USP48-201ENST00000308271 C4orf3Q8WVX3 66 aa14.28□□□□□ -0.12
USP48-201ENST00000308271 IBA57-AS1B1ANH7 110 aa14.28□□□□□ -0.12
USP48-201ENST00000308271 MRAPQ8TCY5 172 aa14.28□□□□□ -0.12
USP48-201ENST00000308271 UBE2D4Q9Y2X8 147 aa14.27□□□□□ -0.12
USP48-201ENST00000308271 ADAMTS20P59510 1910 aa14.27□□□□□ -0.13
USP48-201ENST00000308271 TRAV23DV6A0A075B6W5 121 aa14.27□□□□□ -0.13
USP48-201ENST00000308271 Q6ZTI0 123 aa14.27□□□□□ -0.13
USP48-201ENST00000308271 CDIP1Q9H305 208 aa14.27□□□□□ -0.13
USP48-201ENST00000308271 M0QXV9 152 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 COX7CP15954 63 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 C1orf43Q9BWL3 253 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 DNAH12Q6ZR08 3092 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 UTRNP46939 3433 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 DCANP1Q8TF63 244 aa14.25□□□□□ -0.13
USP48-201ENST00000308271 C5orf47Q569G3 176 aa14.24□□□□□ -0.13
USP48-201ENST00000308271 POM121L12Q8N7R1 296 aa14.24□□□□□ -0.13
USP48-201ENST00000308271 NCR3O14931 201 aa14.24□□□□□ -0.13
USP48-201ENST00000308271 SERP2Q8N6R1 65 aa14.24□□□□□ -0.13
USP48-201ENST00000308271 C20orf197Q8N268 126 aa14.24□□□□□ -0.13
USP48-201ENST00000308271 RPL18AQ02543 176 aaKnown RBP14.23□□□□□ -0.13
USP48-201ENST00000308271 UPK3BQ9BT76 320 aa14.23□□□□□ -0.13
USP48-201ENST00000308271 COL4A2P08572 1712 aa14.23□□□□□ -0.13
USP48-201ENST00000308271 DOPEY1Q5JWR5 2465 aa14.23□□□□□ -0.13
USP48-201ENST00000308271 FUSP35637 526 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP48-201ENST00000308271 NREPQ16612 68 aa14.22□□□□□ -0.13
USP48-201ENST00000308271 LRRK2Q5S007 2527 aa14.22□□□□□ -0.13
USP48-201ENST00000308271 DIRC1Q969H9 104 aa14.21□□□□□ -0.14
USP48-201ENST00000308271 SPAG11BQ08648 103 aa14.2□□□□□ -0.14
USP48-201ENST00000308271 CAMK2N2Q96S95 79 aa14.2□□□□□ -0.14
USP48-201ENST00000308271 USP17L23D6RBM5 183 aa14.2□□□□□ -0.14
USP48-201ENST00000308271 IGLV1-40P01703 118 aa14.2□□□□□ -0.14
USP48-201ENST00000308271 PRO0461Q9UI25 63 aa14.19□□□□□ -0.14
USP48-201ENST00000308271 DEFB114Q30KQ6 69 aa14.19□□□□□ -0.14
USP48-201ENST00000308271 SLPIP03973 132 aa14.19□□□□□ -0.14
USP48-201ENST00000308271 PRO0255Q9UI72 69 aa14.18□□□□□ -0.14
USP48-201ENST00000308271 FAM236DA0A1B0GTK5 79 aa14.17□□□□□ -0.14
USP48-201ENST00000308271 FAM236CP0DP71 79 aa14.17□□□□□ -0.14
USP48-201ENST00000308271 NDUFC2O95298 119 aa14.16□□□□□ -0.14
USP48-201ENST00000308271 LRRC75A-AS1Q8N1F1 130 aa14.16□□□□□ -0.14
USP48-201ENST00000308271 DEFB105AQ8NG35 78 aa14.16□□□□□ -0.14
USP48-201ENST00000308271 ENHOQ6UWT2 76 aa14.15□□□□□ -0.14
USP48-201ENST00000308271 FLNBO75369 2602 aaKnown RBP14.15□□□□□ -0.14
USP48-201ENST00000308271 SMCPP49901 116 aaPredicted RBP14.15□□□□□ -0.14
USP48-201ENST00000308271 AMELXQ99217 191 aa14.15□□□□□ -0.14
USP48-201ENST00000308271 C10orf99Q6UWK7 81 aa14.15□□□□□ -0.14
USP48-201ENST00000308271 DEFB113Q30KQ7 82 aa14.14□□□□□ -0.15
USP48-201ENST00000308271 NRGNQ92686 78 aa14.14□□□□□ -0.15
USP48-201ENST00000308271 TRBV6-4A0A1B0GX49 114 aa14.14□□□□□ -0.15
USP48-201ENST00000308271 CEP350Q5VT06 3117 aa14.13□□□□□ -0.15
USP48-201ENST00000308271 ADAMTSL4-AS1Q5T5F5 129 aa14.13□□□□□ -0.15
USP48-201ENST00000308271 Q6JHZ5 121 aa14.13□□□□□ -0.15
USP48-201ENST00000308271 TRBV6-8A0A0A6YYG3 113 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 SMIM11BQ8TCY0 68 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 SPART-AS1P0CW21 52 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 HIGD2BQ4VC39 106 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 LINC00242Q5T6M2 205 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 CDK2AP2O75956 126 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 LINC00526Q96FQ7 95 aa14.12□□□□□ -0.15
USP48-201ENST00000308271 Q6YL49 198 aa14.11□□□□□ -0.15
USP48-201ENST00000308271 RAI1Q7Z5J4 1906 aaPredicted RBP14.11□□□□□ -0.15
USP48-201ENST00000308271 LINC00694P0DN24 101 aa14.11□□□□□ -0.15
USP48-201ENST00000308271 COX7BP24311 80 aa14.11□□□□□ -0.15
USP48-201ENST00000308271 Q6ZSV7 163 aa14.11□□□□□ -0.15
USP48-201ENST00000308271 C19orf84I3L1E1 186 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 ZNF580Q9UK33 172 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 SETD2Q9BYW2 2564 aaPredicted RBP14.1□□□□□ -0.15
USP48-201ENST00000308271 IGKV2D-24A0A075B6R9 120 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 ETDCA0A1B0GVM5 59 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 ESM1Q9NQ30 184 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 KIF25-AS1Q9Y6Z4 181 aa14.1□□□□□ -0.15
USP48-201ENST00000308271 USP9YO00507 2555 aaPredicted RBP14.09□□□□□ -0.15
USP48-201ENST00000308271 BRI3O95415 125 aa14.09□□□□□ -0.15
USP48-201ENST00000308271 FAM110AQ9BQ89 295 aa14.08□□□□□ -0.15
USP48-201ENST00000308271 PSCAO43653 123 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 CDC42SE2Q9NRR3 84 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 POLQO75417 2590 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 USP9XQ93008 2570 aaPredicted RBP14.08□□□□□ -0.16
USP48-201ENST00000308271 SVIPQ8NHG7 77 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 RMI2Q96E14 147 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 CHCHD7Q9BUK0 85 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 KLK12Q9UKR0 248 aa14.08□□□□□ -0.16
USP48-201ENST00000308271 SMIM1B2RUZ4 78 aa14.07□□□□□ -0.16
USP48-201ENST00000308271 C6orf99Q4VX62 202 aa14.07□□□□□ -0.16
USP48-201ENST00000308271 CITED2Q99967 270 aaPredicted RBP14.07□□□□□ -0.16
USP48-201ENST00000308271 BPTFQ12830 3046 aa14.07□□□□□ -0.16
USP48-201ENST00000308271 RPL28P46779 137 aaKnown RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms