RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 XCL2Q9UBD3 114 aa12.03□□□□□ -0.48
GPC1-201ENST00000264039 IGFL3Q6UXB1 125 aa12.02□□□□□ -0.48
GPC1-201ENST00000264039 C20orf197Q8N268 126 aa12.02□□□□□ -0.48
GPC1-201ENST00000264039 C5orf56Q8N8D9 126 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 C11orf44Q8N8P7 122 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 COL12A1Q99715 3063 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 NCR3O14931 201 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 AMELXQ99217 191 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 Q9UF83 564 aa12.02□□□□□ -0.49
GPC1-201ENST00000264039 HAMPP81172 84 aa12.01□□□□□ -0.49
GPC1-201ENST00000264039 PLA2G2CQ5R387 149 aa12.01□□□□□ -0.49
GPC1-201ENST00000264039 MALP21145 153 aa12.01□□□□□ -0.49
GPC1-201ENST00000264039 Q8N2B8 174 aa12.01□□□□□ -0.49
GPC1-201ENST00000264039 LINC00526Q96FQ7 95 aa12.01□□□□□ -0.49
GPC1-201ENST00000264039 MED14OSP0DP75 135 aa12□□□□□ -0.49
GPC1-201ENST00000264039 SND1-IT1Q9HBX3 110 aa12□□□□□ -0.49
GPC1-201ENST00000264039 LINC00315P59091 139 aa12□□□□□ -0.49
GPC1-201ENST00000264039 USMG5Q96IX5 58 aa12□□□□□ -0.49
GPC1-201ENST00000264039 RNF223E7ERA6 249 aa12□□□□□ -0.49
GPC1-201ENST00000264039 TMEM243Q9BU79 118 aa12□□□□□ -0.49
GPC1-201ENST00000264039 MIR7-3HGQ8N6C7 128 aa11.99□□□□□ -0.49
GPC1-201ENST00000264039 PKIGQ9Y2B9 76 aa11.99□□□□□ -0.49
GPC1-201ENST00000264039 FAM240AA0A1B0GVK7 77 aa11.99□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1BA6NDE4 496 aaKnown RBP11.99□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1EA6NEQ0 496 aaKnown RBP11.99□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1DP0C7P1 496 aaKnown RBP11.99□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1A1P0DJD3 496 aaKnown RBP11.99□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1CP0DJD4 496 aa11.99□□□□□ -0.49
GPC1-201ENST00000264039 KIF25-AS1Q9Y6Z4 181 aa11.99□□□□□ -0.49
GPC1-201ENST00000264039 F5H768 121 aa11.98□□□□□ -0.49
GPC1-201ENST00000264039 SMCR5Q8TEV8 140 aa11.98□□□□□ -0.49
GPC1-201ENST00000264039 ABCA12Q86UK0 2595 aa11.98□□□□□ -0.49
GPC1-201ENST00000264039 TRGV2A0A075B6R0 118 aa11.98□□□□□ -0.49
GPC1-201ENST00000264039 Q8N6K4 173 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 TRBV7-7A0A0K0K1E9 115 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 USP17L23D6RBM5 183 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 GHRHP01286 108 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 RBMY1FQ15415 496 aaKnown RBP11.97□□□□□ -0.49
GPC1-201ENST00000264039 IMUPQ9GZP8 106 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 MTORP42345 2549 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 C5orf38Q86SI9 138 aa11.97□□□□□ -0.49
GPC1-201ENST00000264039 ZNF415Q09FC8 603 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 C4orf26Q17RF5 130 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 DEFB136Q30KP8 78 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 C6orf226Q5I0X4 101 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 C10orf99Q6UWK7 81 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 LAMTOR3Q9UHA4 124 aa11.96□□□□□ -0.49
GPC1-201ENST00000264039 HIST2H2BDQ6DRA6 164 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 TRBV6-5A0A0K0K1A5 114 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 IGHV4-38-2P0DP08 117 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 APRG1Q8IVJ8 170 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 SVEP1Q4LDE5 3571 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 TRAV13-2A0A0B4J235 113 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 RPL18AQ02543 176 aaKnown RBP11.95□□□□□ -0.5
GPC1-201ENST00000264039 SPANXDQ9BXN6 97 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 SPANXCQ9NY87 97 aa11.95□□□□□ -0.5
GPC1-201ENST00000264039 AKAP13Q12802 2813 aa11.94□□□□□ -0.5
GPC1-201ENST00000264039 MRPS36P82909 103 aaKnown RBP11.94□□□□□ -0.5
GPC1-201ENST00000264039 LRRC75A-AS1Q8N1F1 130 aa11.94□□□□□ -0.5
GPC1-201ENST00000264039 CLPSL2Q6UWE3 100 aa11.94□□□□□ -0.5
GPC1-201ENST00000264039 SIRPDQ9H106 197 aa11.94□□□□□ -0.5
GPC1-201ENST00000264039 A0A0J9YX75 114 aa11.93□□□□□ -0.5
GPC1-201ENST00000264039 U3KQE9 123 aa11.93□□□□□ -0.5
GPC1-201ENST00000264039 KLLNB2CW77 178 aa11.93□□□□□ -0.5
GPC1-201ENST00000264039 COX6A2Q02221 97 aa11.93□□□□□ -0.5
GPC1-201ENST00000264039 HIST2H2BCQ6DN03 193 aa11.93□□□□□ -0.5
GPC1-201ENST00000264039 RBM3P98179 157 aaKnown RBP11.92□□□□□ -0.5
GPC1-201ENST00000264039 MAPK1IP1LQ8NDC0 245 aa11.92□□□□□ -0.5
GPC1-201ENST00000264039 EBI3Q14213 229 aa11.92□□□□□ -0.5
GPC1-201ENST00000264039 A0A0U1RQV1 116 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 PIP4P1Q86T03 277 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 SERP2Q8N6R1 65 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 CUBNO60494 3623 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 A0A1W2PRX2 142 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 ENHOQ6UWT2 76 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 WFDC11Q8NEX6 87 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 CITED2Q99967 270 aaPredicted RBP11.91□□□□□ -0.5
GPC1-201ENST00000264039 Q8NA96 180 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 LRRK2Q5S007 2527 aa11.91□□□□□ -0.5
GPC1-201ENST00000264039 RELNP78509 3460 aa11.9□□□□□ -0.5
GPC1-201ENST00000264039 HILS1P60008 231 aa11.9□□□□□ -0.5
GPC1-201ENST00000264039 UBL5Q9BZL1 73 aa11.9□□□□□ -0.5
GPC1-201ENST00000264039 FAM218AQ96MZ4 157 aa11.9□□□□□ -0.5
GPC1-201ENST00000264039 CDSNQ15517 529 aa11.89□□□□□ -0.51
GPC1-201ENST00000264039 MRAPQ8TCY5 172 aa11.89□□□□□ -0.51
GPC1-201ENST00000264039 LINC00846Q9NV44 126 aa11.89□□□□□ -0.51
GPC1-201ENST00000264039 EPG5Q9HCE0 2579 aa11.89□□□□□ -0.51
GPC1-201ENST00000264039 NDUFA1O15239 70 aa11.88□□□□□ -0.51
GPC1-201ENST00000264039 TMEM86BQ8N661 226 aa11.88□□□□□ -0.51
GPC1-201ENST00000264039 UBE2D4Q9Y2X8 147 aa11.88□□□□□ -0.51
GPC1-201ENST00000264039 LITAFQ99732 161 aa11.88□□□□□ -0.51
GPC1-201ENST00000264039 TRGV4A0A0C4DH28 118 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 Q6ZSN1 163 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 SNURFQ9Y675 71 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 ORMDL1Q9P0S3 153 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 A0A087WYN8 130 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 CXCL5P42830 114 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 C9orf85Q96MD7 179 aa11.87□□□□□ -0.51
GPC1-201ENST00000264039 TMEM258P61165 79 aa11.86□□□□□ -0.51
GPC1-201ENST00000264039 S100A7L2Q5SY68 101 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms