RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 LNPKQ9C0E8 428 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 DOCK2Q92608 1830 aa11.94□□□□□ -0.5
CLN3-261ENST00000637686 TTC41PQ6P2S7 1318 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 ZNF532Q9HCE3 1301 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 SLC10A3P09131 477 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 MAP2K2P36507 400 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 NOGQ13253 232 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 SLFNL1Q499Z3 407 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 TMED8Q6PL24 325 aaPredicted RBP11.93□□□□□ -0.5
CLN3-261ENST00000637686 SH3BP5LQ7L8J4 393 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 HOOK2Q96ED9 719 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 CLMNQ96JQ2 1002 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 ZIC5Q96T25 663 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 OSBPL3Q9H4L5 887 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 AK9Q5TCS8 1911 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 PCNTO95613 3336 aa11.93□□□□□ -0.5
CLN3-261ENST00000637686 SALL3Q9BXA9 1300 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 MAGEB6P1A0A0J9YX57 407 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 TCRBV5S4A2TA0A5A2 114 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 DDTLA6NHG4 134 aaPredicted RBP11.92□□□□□ -0.5
CLN3-261ENST00000637686 ERC2O15083 957 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 NPM3O75607 178 aaKnown RBP11.92□□□□□ -0.5
CLN3-261ENST00000637686 GLRX3O76003 335 aaKnown RBP11.92□□□□□ -0.5
CLN3-261ENST00000637686 CHGBP05060 677 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 ADD2P35612 726 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 MKRN3Q13064 507 aaKnown RBP11.92□□□□□ -0.5
CLN3-261ENST00000637686 DCAF15Q66K64 600 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 ANKRD13AQ8IZ07 590 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 PI4K2BQ8TCG2 481 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 TGFBRAP1Q8WUH2 860 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 SLC10A4Q96EP9 437 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 CSRNP1Q96S65 589 aa11.92□□□□□ -0.5
CLN3-261ENST00000637686 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLN3-261ENST00000637686 OSBPL5Q9H0X9 879 aaPredicted RBP11.92□□□□□ -0.5
CLN3-261ENST00000637686 UNCXA6NJT0 531 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 HSPA1AP0DMV8 641 aaKnown RBP11.91□□□□□ -0.5
CLN3-261ENST00000637686 HSPA1BP0DMV9 641 aaKnown RBP11.91□□□□□ -0.5
CLN3-261ENST00000637686 SLURP2P0DP57 97 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 MAP3K9P80192 1104 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 KIF23Q02241 960 aaPredicted RBP11.91□□□□□ -0.5
CLN3-261ENST00000637686 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.91□□□□□ -0.5
CLN3-261ENST00000637686 MAPKAPK5Q8IW41 473 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLN3-261ENST00000637686 WRNIP1Q96S55 665 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 RIOK1Q9BRS2 568 aaKnown RBP11.91□□□□□ -0.5
CLN3-261ENST00000637686 ZNF341Q9BYN7 854 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 WBP1LQ9NX94 342 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 STAP2Q9UGK3 403 aa11.91□□□□□ -0.5
CLN3-261ENST00000637686 FLT1P17948 1338 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 PDE4AP27815 886 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 USP5P45974 858 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 PDE1AP54750 535 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 MAP2K1Q02750 393 aaPredicted RBP11.9□□□□□ -0.5
CLN3-261ENST00000637686 VGLL4Q14135 290 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 SPRYD7Q5W111 196 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 CERS3Q8IU89 383 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 KBTBD3Q8NAB2 608 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 ZKSCAN4Q969J2 545 aaPredicted RBP11.9□□□□□ -0.5
CLN3-261ENST00000637686 ELP3Q9H9T3 547 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 ATRNL1Q5VV63 1379 aa11.9□□□□□ -0.5
CLN3-261ENST00000637686 THSD7BQ9C0I4 1608 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 INPP5BP32019 993 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 UBE3CQ15386 1083 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 ZSCAN25Q6NSZ9 544 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 PLEKHM2Q8IWE5 1019 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 AIDAQ96BJ3 306 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 WNK4Q96J92 1243 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 ARMT1Q9H993 441 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 SAP30BPQ9UHR5 308 aaKnown RBP11.89□□□□□ -0.51
CLN3-261ENST00000637686 ZNF112Q9UJU3 913 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 CSADQ9Y600 493 aa11.89□□□□□ -0.51
CLN3-261ENST00000637686 OTOFQ9HC10 1997 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 PHF20L1A8MW92 1017 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 MBD4O95243 580 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 GJA5P36382 358 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 MAP3K10Q02779 954 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 SLC4A8Q2Y0W8 1093 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 BMP2KLQ5H9B9 411 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 TICAM2Q86XR7 235 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 LCORLQ8N3X6 602 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 OPTNQ96CV9 577 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 BEGAINQ9BUH8 593 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 CRNKL1Q9BZJ0 848 aaKnown RBP11.88□□□□□ -0.51
CLN3-261ENST00000637686 PUS7LQ9H0K6 701 aaKnown RBP11.88□□□□□ -0.51
CLN3-261ENST00000637686 DHX36Q9H2U1 1008 aaKnown RBP11.88□□□□□ -0.51
CLN3-261ENST00000637686 PI4KBQ9UBF8 816 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 PALD1Q9ULE6 856 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 SNCAIPQ9Y6H5 919 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 CDK5RAP2Q96SN8 1893 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 COL2A1P02458 1487 aaPredicted RBP11.88□□□□□ -0.51
CLN3-261ENST00000637686 MYH7P12883 1935 aa11.88□□□□□ -0.51
CLN3-261ENST00000637686 FAM196BA6NMK8 535 aa11.87□□□□□ -0.51
CLN3-261ENST00000637686 FOXN1O15353 648 aa11.87□□□□□ -0.51
CLN3-261ENST00000637686 RNF113AO15541 343 aaKnown RBP11.87□□□□□ -0.51
CLN3-261ENST00000637686 TBC1D12O60347 775 aa11.87□□□□□ -0.51
CLN3-261ENST00000637686 SDR42E1Q8WUS8 393 aa11.87□□□□□ -0.51
CLN3-261ENST00000637686 FSD1Q9BTV5 496 aa11.87□□□□□ -0.51
CLN3-261ENST00000637686 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLN3-261ENST00000637686 FOCADQ5VW36 1801 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms