RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ARPP21Q9UBL0 812 aaPredicted RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 MCM4P33991 863 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 EVX2Q03828 476 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 SBK1Q52WX2 424 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 RTKN2Q8IZC4 609 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 TMEM87BQ96K49 555 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 BRPF3Q9ULD4 1205 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 NAP1L2Q9ULW6 460 aaPredicted RBP19.86■□□□□ 0.77
CLN3-252ENST00000636907 ANGEL1Q9UNK9 670 aaKnown RBP19.86■□□□□ 0.77
CLN3-252ENST00000636907 TTF2Q9UNY4 1162 aaKnown RBP19.86■□□□□ 0.77
CLN3-252ENST00000636907 DAGLAQ9Y4D2 1042 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 SCN9AQ15858 1988 aa19.86■□□□□ 0.77
CLN3-252ENST00000636907 PSDA5PKW4 1024 aaPredicted RBP19.85■□□□□ 0.77
CLN3-252ENST00000636907 PPIP5K2O43314 1243 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 CYP2D6P10635 497 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 IGDCC4Q8TDY8 1250 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 TGFBRAP1Q8WUH2 860 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 SGIP1Q9BQI5 828 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 MCM9Q9NXL9 1143 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 ZNF646O15015 1829 aaPredicted RBP19.85■□□□□ 0.77
CLN3-252ENST00000636907 NAV1Q8NEY1 1877 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 CDK5RAP2Q96SN8 1893 aa19.85■□□□□ 0.77
CLN3-252ENST00000636907 KLF18A0A0U1RQI7 1052 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 FGRP09769 529 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 USP17L8P0C7I0 530 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 SYT1P21579 422 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 RHBDL3P58872 404 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 CCT2P78371 535 aaKnown RBP19.84■□□□□ 0.77
CLN3-252ENST00000636907 STRIP1Q5VSL9 837 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 FOXD4L5Q5VV16 416 aaPredicted RBP19.84■□□□□ 0.77
CLN3-252ENST00000636907 FOXD4L4Q8WXT5 416 aaPredicted RBP19.84■□□□□ 0.77
CLN3-252ENST00000636907 GBP4Q96PP9 640 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 PSMD1Q99460 953 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 PIM2Q9P1W9 311 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 PLCG2P16885 1265 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 DACT2Q5SW24 774 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 CLEC17AQ6ZS10 378 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 TEX11Q8IYF3 940 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 SENP2Q9HC62 589 aa19.84■□□□□ 0.77
CLN3-252ENST00000636907 USP17L3A6NCW0 530 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 USP17L4A6NCW7 530 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 JAK2O60674 1132 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 FKBP1AP62942 108 aaKnown RBP19.83■□□□□ 0.76
CLN3-252ENST00000636907 TMEM67Q5HYA8 995 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 USP17L1Q7RTZ2 530 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 MAPKAPK5Q8IW41 473 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 LY9Q9HBG7 655 aa19.83■□□□□ 0.76
CLN3-252ENST00000636907 NCOA5Q9HCD5 579 aaKnown RBP19.83■□□□□ 0.76
CLN3-252ENST00000636907 PPP1R1BQ9UD71 204 aaPredicted RBP19.83■□□□□ 0.76
CLN3-252ENST00000636907 WDR33Q9C0J8 1336 aaKnown RBP19.83■□□□□ 0.76
CLN3-252ENST00000636907 GOLGA8BA8MQT2 603 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 IFIT3O14879 490 aaKnown RBP19.82■□□□□ 0.76
CLN3-252ENST00000636907 STX6O43752 255 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 BAG4O95429 457 aaKnown RBP19.82■□□□□ 0.76
CLN3-252ENST00000636907 CTDNEP1O95476 244 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 PCP11498 1178 aaKnown RBP19.82■□□□□ 0.76
CLN3-252ENST00000636907 SCNN1DP51172 638 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 SLC4A8Q2Y0W8 1093 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 C12orf60Q5U649 245 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 ESR2Q92731 530 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 LLPHQ9BRT6 129 aaKnown RBP19.82■□□□□ 0.76
CLN3-252ENST00000636907 HPS5Q9UPZ3 1129 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.82■□□□□ 0.76
CLN3-252ENST00000636907 ADAMTSL1Q8N6G6 1762 aa19.82■□□□□ 0.76
CLN3-252ENST00000636907 PRDM1O75626 825 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 SGMS1Q86VZ5 419 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 RAB11FIP4Q86YS3 637 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 NSUN7Q8NE18 718 aaKnown RBP19.81■□□□□ 0.76
CLN3-252ENST00000636907 SMARCC2Q8TAQ2 1214 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 ZKSCAN3Q9BRR0 538 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 BRCA1P38398 1863 aaKnown RBP19.81■□□□□ 0.76
CLN3-252ENST00000636907 YDJCA8MPS7 323 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 SLC3A2P08195 630 aaKnown RBP19.81■□□□□ 0.76
CLN3-252ENST00000636907 LIFRP42702 1097 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 PTGER2P43116 358 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 DALRD3Q5D0E6 543 aaKnown RBP19.81■□□□□ 0.76
CLN3-252ENST00000636907 SOGA3Q5TF21 947 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 HHIPL2Q6UWX4 724 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 MTA3Q9BTC8 594 aa19.81■□□□□ 0.76
CLN3-252ENST00000636907 ZNF277Q9NRM2 450 aaPredicted RBP19.81■□□□□ 0.76
CLN3-252ENST00000636907 DDX60LQ5H9U9 1706 aaKnown RBP19.8■□□□□ 0.76
CLN3-252ENST00000636907 ORC4O43929 436 aa19.8■□□□□ 0.76
CLN3-252ENST00000636907 FLT1P17948 1338 aa19.8■□□□□ 0.76
CLN3-252ENST00000636907 LARP1BQ659C4 914 aaKnown RBP19.8■□□□□ 0.76
CLN3-252ENST00000636907 KIAA0825Q8IV33 1275 aa19.8■□□□□ 0.76
CLN3-252ENST00000636907 KLHL34Q8N239 644 aa19.8■□□□□ 0.76
CLN3-252ENST00000636907 TEKT1Q969V4 418 aa19.8■□□□□ 0.76
CLN3-252ENST00000636907 COL4A5P29400 1685 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 ROBO3Q96MS0 1386 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 DDX11L8A8MPP1 907 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 RANBP6O60518 1105 aaKnown RBP19.79■□□□□ 0.76
CLN3-252ENST00000636907 ZSCAN22P10073 491 aaPredicted RBP19.79■□□□□ 0.76
CLN3-252ENST00000636907 CRKP46108 304 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 SART3Q15020 963 aaKnown RBP19.79■□□□□ 0.76
CLN3-252ENST00000636907 APOA5Q6Q788 366 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 NFXL1Q6ZNB6 911 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 AMOTL1Q8IY63 956 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 DDX11Q96FC9 970 aa19.79■□□□□ 0.76
CLN3-252ENST00000636907 SAP30BPQ9UHR5 308 aaKnown RBP19.79■□□□□ 0.76
CLN3-252ENST00000636907 MTMR6Q9Y217 621 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms