RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TRIM47Q96LD4 638 aa19.99■□□□□ 0.79
CLN3-246ENST00000636228 ZHX2Q9Y6X8 837 aa19.99■□□□□ 0.79
CLN3-246ENST00000636228 PNMA6EA0A0J9YXQ4 647 aa19.98■□□□□ 0.79
CLN3-246ENST00000636228 FMNL1O95466 1100 aaPredicted RBP19.98■□□□□ 0.79
CLN3-246ENST00000636228 PTPRAP18433 802 aa19.98■□□□□ 0.79
CLN3-246ENST00000636228 MVPQ14764 893 aaKnown RBP19.98■□□□□ 0.79
CLN3-246ENST00000636228 SPTY2D1Q68D10 685 aaPredicted RBP19.98■□□□□ 0.79
CLN3-246ENST00000636228 ERICH6Q7L0X2 663 aa19.98■□□□□ 0.79
CLN3-246ENST00000636228 FAM163AQ96GL9 167 aaPredicted RBP19.98■□□□□ 0.79
CLN3-246ENST00000636228 HMG20BQ9P0W2 317 aa19.98■□□□□ 0.79
CLN3-246ENST00000636228 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.98■□□□□ 0.79
CLN3-246ENST00000636228 ZSWIM8A7E2V4 1837 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 ZBTB22O15209 634 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 GNAI2P04899 355 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 GORABQ5T7V8 394 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 CCDC84Q86UT8 332 aaPredicted RBP19.97■□□□□ 0.79
CLN3-246ENST00000636228 SLF2Q8IX21 1173 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 SCYL3Q8IZE3 742 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 PICK1Q9NRD5 415 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 MROH7-TTC4A0A0A0MT08 1334 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 ADGRA2Q96PE1 1338 aa19.97■□□□□ 0.79
CLN3-246ENST00000636228 RFX7Q2KHR2 1363 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 CXCL11O14625 94 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 IPO8O15397 1037 aaKnown RBP19.96■□□□□ 0.79
CLN3-246ENST00000636228 OSBPP22059 807 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 RHBDL3P58872 404 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 ATF7IPQ6VMQ6 1270 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 GADL1Q6ZQY3 521 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 SPATA5Q8NB90 893 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 SRRDQ9UH36 339 aa19.96■□□□□ 0.79
CLN3-246ENST00000636228 PDS5AQ29RF7 1337 aaKnown RBP19.96■□□□□ 0.79
CLN3-246ENST00000636228 GPR75-ASB3A0A0A6YYF3 556 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 FAM196BA6NMK8 535 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 MAP3K10Q02779 954 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 G3BP1Q13283 466 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-246ENST00000636228 MTFR1Q15390 333 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 AFG3L2Q9Y4W6 797 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 MYH13Q9UKX3 1938 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 BRCA2P51587 3418 aa19.95■□□□□ 0.78
CLN3-246ENST00000636228 MKI67P46013 3256 aaKnown RBP19.94■□□□□ 0.78
CLN3-246ENST00000636228 A0A0G2JLL6 359 aaPredicted RBP19.94■□□□□ 0.78
CLN3-246ENST00000636228 GNRH1P01148 92 aa19.94■□□□□ 0.78
CLN3-246ENST00000636228 PRRT2Q7Z6L0 340 aaPredicted RBP19.94■□□□□ 0.78
CLN3-246ENST00000636228 TMEM57Q8N5G2 664 aa19.94■□□□□ 0.78
CLN3-246ENST00000636228 PARK7Q99497 189 aaKnown RBP19.94■□□□□ 0.78
CLN3-246ENST00000636228 RAI14Q9P0K7 980 aa19.94■□□□□ 0.78
CLN3-246ENST00000636228 TRIM75PA6NK02 468 aa19.93■□□□□ 0.78
CLN3-246ENST00000636228 PRMT2P55345 433 aa19.93■□□□□ 0.78
CLN3-246ENST00000636228 RAET1EQ8TD07 263 aa19.93■□□□□ 0.78
CLN3-246ENST00000636228 NSUN4Q96CB9 384 aaKnown RBP19.93■□□□□ 0.78
CLN3-246ENST00000636228 CTNND1O60716 968 aaKnown RBP19.92■□□□□ 0.78
CLN3-246ENST00000636228 BCRP11274 1271 aa19.92■□□□□ 0.78
CLN3-246ENST00000636228 HOXD10P28358 340 aa19.92■□□□□ 0.78
CLN3-246ENST00000636228 MCAMP43121 646 aa19.92■□□□□ 0.78
CLN3-246ENST00000636228 FASTKD5Q7L8L6 764 aaKnown RBP19.92■□□□□ 0.78
CLN3-246ENST00000636228 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.92■□□□□ 0.78
CLN3-246ENST00000636228 SNRKQ9NRH2 765 aa19.92■□□□□ 0.78
CLN3-246ENST00000636228 MYPNQ86TC9 1320 aa19.92■□□□□ 0.78
CLN3-246ENST00000636228 ARID4AP29374 1257 aaPredicted RBP19.91■□□□□ 0.78
CLN3-246ENST00000636228 GRK4P32298 578 aa19.91■□□□□ 0.78
CLN3-246ENST00000636228 PRKCZQ05513 592 aa19.91■□□□□ 0.78
CLN3-246ENST00000636228 HABP4Q5JVS0 413 aaKnown RBP19.91■□□□□ 0.78
CLN3-246ENST00000636228 GABRQQ9UN88 632 aa19.91■□□□□ 0.78
CLN3-246ENST00000636228 AK9Q5TCS8 1911 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 LDHCP07864 332 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 GSTO1P78417 241 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 GCC1Q96CN9 775 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 C1orf115Q9H7X2 142 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 LRP2BPQ9P2M1 347 aa19.9■□□□□ 0.78
CLN3-246ENST00000636228 BIN2Q9UBW5 565 aaPredicted RBP19.9■□□□□ 0.78
CLN3-246ENST00000636228 FCGRTP55899 365 aa19.89■□□□□ 0.77
CLN3-246ENST00000636228 RRP1BQ14684 758 aaKnown RBP19.89■□□□□ 0.77
CLN3-246ENST00000636228 ZKSCAN2Q63HK3 967 aa19.89■□□□□ 0.77
CLN3-246ENST00000636228 SH3RF3Q8TEJ3 882 aaPredicted RBP19.89■□□□□ 0.77
CLN3-246ENST00000636228 SHISA4Q96DD7 197 aa19.89■□□□□ 0.77
CLN3-246ENST00000636228 MYH2Q9UKX2 1941 aa19.89■□□□□ 0.77
CLN3-246ENST00000636228 KIAA0100Q14667 2235 aaKnown RBP19.88■□□□□ 0.77
CLN3-246ENST00000636228 POLA2Q14181 598 aa19.88■□□□□ 0.77
CLN3-246ENST00000636228 TREML2Q5T2D2 321 aa19.88■□□□□ 0.77
CLN3-246ENST00000636228 TEX11Q8IYF3 940 aa19.88■□□□□ 0.77
CLN3-246ENST00000636228 DBNDD2Q9BQY9 259 aa19.88■□□□□ 0.77
CLN3-246ENST00000636228 OSBPL5Q9H0X9 879 aaPredicted RBP19.88■□□□□ 0.77
CLN3-246ENST00000636228 PCDH10Q9P2E7 1040 aa19.88■□□□□ 0.77
CLN3-246ENST00000636228 RBBP6Q7Z6E9 1792 aaKnown RBP19.88■□□□□ 0.77
CLN3-246ENST00000636228 TBC1D12O60347 775 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 UQCRFS1P1P0C7P4 283 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 CCL5P13501 91 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 SPP2Q13103 211 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 OS9Q13438 667 aaPredicted RBP19.87■□□□□ 0.77
CLN3-246ENST00000636228 TNNI3KQ59H18 835 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 TTC39AQ5SRH9 613 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 FPGT-TNNI3KV9GXZ4 949 aa19.87■□□□□ 0.77
CLN3-246ENST00000636228 NPM3O75607 178 aaKnown RBP19.86■□□□□ 0.77
CLN3-246ENST00000636228 SURF6O75683 361 aaKnown RBP19.86■□□□□ 0.77
CLN3-246ENST00000636228 ATP8B2P98198 1209 aa19.86■□□□□ 0.77
CLN3-246ENST00000636228 ANKRD13CQ8N6S4 541 aa19.86■□□□□ 0.77
CLN3-246ENST00000636228 SMCR8Q8TEV9 937 aaPredicted RBP19.86■□□□□ 0.77
CLN3-246ENST00000636228 RNF208Q9H0X6 261 aa19.86■□□□□ 0.77
CLN3-246ENST00000636228 AGTPBP1Q9UPW5 1226 aa19.86■□□□□ 0.77
CLN3-246ENST00000636228 H0YGN5 161 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms