RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ZBTB22	O15209	634 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZFY	P08048	801 aa	Predicted RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PDE6A	P16499	860 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ANGEL2	Q5VTE6	544 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CREB3L3	Q68CJ9	461 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	DLK2	Q6UY11	383 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	APPBP2	Q92624	585 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	UPF3B	Q9BZI7	483 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	MYOZ2	Q9NPC6	264 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	MYO3B	Q8WXR4	1341 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587		K7ELQ4	463 aa	Predicted RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PITPNM1	O00562	1244 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	IDH1	O75874	414 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	HSPD1	P10809	573 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PKN2	Q16513	984 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CAVIN4	Q5BKX8	364 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SLC9C2	Q5TAH2	1124 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	OGFOD1	Q8N543	542 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZNF384	Q8TF68	577 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TTC14	Q96N46	770 aa		11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	GNL3L	Q9NVN8	582 aa	Known RBP	11.36	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZNF646	O15015	1829 aa	Predicted RBP	11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZNF532	Q9HCE3	1301 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CPA1	P15085	419 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	NF2	P35240	595 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	DDIT3	P35638	169 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	NEK4	P51957	841 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	UBE3C	Q15386	1083 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ZSCAN25	Q6NSZ9	544 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	C15orf52	Q6ZUT6	534 aa	Known RBP	11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CTU1	Q7Z7A3	348 aa	Known RBP	11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	VPS37D	Q86XT2	251 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	DSCC1	Q9BVC3	393 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	LEMD3	Q9Y2U8	911 aa		11.35	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ST18	O60284	1047 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	TSGA10IP	Q3SY00	556 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PCDH10	Q9P2E7	1040 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PSME4	Q14997	1843 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PDS5A	Q29RF7	1337 aa	Known RBP	11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SCN9A	Q15858	1988 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	GPAA1	O43292	621 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	CYP21A2	P08686	494 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	HIBADH	P31937	336 aa	Known RBP	11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	FXR2	P51116	673 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	STRIP1	Q5VSL9	837 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	ADGRA1	Q86SQ6	560 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	RASAL3	Q86YV0	1011 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	SPRYD3	Q8NCJ5	442 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	COA1	Q9GZY4	146 aa		11.34	□□□□□ -0.59
PDLIM5-223	ENST00000627587	PAPPA2	Q9BXP8	1791 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	SEMA3E	O15041	775 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NOM1	Q5C9Z4	860 aa	Known RBP	11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	STOX1	Q6ZVD7	989 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MAGEB6	Q8N7X4	407 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	IL27	Q8NEV9	243 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TM6SF1	Q9BZW5	370 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZSWIM6	Q9HCJ5	1215 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	HDAC9	Q9UKV0	1011 aa		11.33	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CDK5RAP2	Q96SN8	1893 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ZKSCAN1	P17029	563 aa	Predicted RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TM4SF4	P48230	202 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MAP3K12	Q12852	859 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	RNF20	Q5VTR2	975 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TTLL5	Q6EMB2	1281 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TDRD7	Q8NHU6	1098 aa	Known RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	SLK	Q9H2G2	1235 aa	Predicted RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	DENND2A	Q9ULE3	1009 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ASTN2	O75129	1339 aa	Predicted RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MYH2	Q9UKX2	1941 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	FRAT2	O75474	233 aa	Predicted RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	CAST	P20810	708 aa	Known RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	DACT2	Q5SW24	774 aa		11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	JAKMIP1	Q96N16	626 aa	Known RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	STRBP	Q96SI9	672 aa	Known RBP	11.32	□□□□□ -0.6
PDLIM5-223	ENST00000627587	FGA	P02671	866 aa		11.31	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TTLL12	Q14166	644 aa	Predicted RBP	11.31	□□□□□ -0.6
PDLIM5-223	ENST00000627587	RUFY3	Q7L099	469 aa		11.31	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ARMC9	Q7Z3E5	817 aa		11.31	□□□□□ -0.6
PDLIM5-223	ENST00000627587	UBE2Q2L	H0YL09	131 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	PRDX5	P30044	214 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	SREBF2	Q12772	1141 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	GRIK5	Q16478	980 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NBPF9	Q3BBW0	867 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	TMX3	Q96JJ7	454 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	NBPF3	Q9H094	633 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	LRP2BP	Q9P2M1	347 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	ABCF2	Q9UG63	623 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	JAG2	Q9Y219	1238 aa		11.3	□□□□□ -0.6
PDLIM5-223	ENST00000627587	UNCX	A6NJT0	531 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	WNT10B	O00744	389 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MBD4	O95243	580 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	IL1R1	P14778	569 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	MCM2	P49736	904 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	AK2	P54819	239 aa		11.29	□□□□□ -0.6
PDLIM5-223	ENST00000627587	INHBE	P58166	350 aa		11.29	□□□□□ -0.6

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