RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZEB1P37275 1124 aaPredicted RBP10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 PHKA1P46020 1223 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 HHIPL2Q6UWX4 724 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 FAM151AQ8WW52 585 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 ADGRA2Q96PE1 1338 aa10.82□□□□□ -0.68
SHKBP1-220ENST00000599716 FMNL1O95466 1100 aaPredicted RBP10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 PRKCZQ05513 592 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 PPATQ06203 517 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 KIF22Q14807 665 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 DCAF15Q66K64 600 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 SH3BP5LQ7L8J4 393 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 LPIN2Q92539 896 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 USP40Q9NVE5 1235 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 SRRDQ9UH36 339 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 GABRQQ9UN88 632 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 MAST3O60307 1309 aa10.81□□□□□ -0.68
SHKBP1-220ENST00000599716 RPAP1Q9BWH6 1393 aaPredicted RBP10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 MYH2Q9UKX2 1941 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 DOCK2Q92608 1830 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 ZNF316A6NFI3 1004 aaPredicted RBP10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 FAM196BA6NMK8 535 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 TNFRSF10AO00220 468 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 EVI5O60447 810 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 ATP2B3Q16720 1220 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 FKBP1CQ5VVH2 108 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 GPAT2Q6NUI2 795 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 ANKRD23Q86SG2 305 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 WDR66Q8TBY9 1149 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 RAET1EQ8TD07 263 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 GDF15Q99988 308 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 ZNF112Q9UJU3 913 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 KCNH4Q9UQ05 1017 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 MGAMO43451 1857 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 PTPRCP08575 1304 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 MYPNQ86TC9 1320 aa10.8□□□□□ -0.68
SHKBP1-220ENST00000599716 ATRNL1Q5VV63 1379 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 TMEM265A0A087WTH1 108 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 WDHD1O75717 1129 aaPredicted RBP10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 LDHBP07195 334 aaKnown RBP10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 CCL5P13501 91 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 ELNP15502 786 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 RGS3P49796 1198 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 PICALMQ13492 652 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 GADL1Q6ZQY3 521 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 GUCD1Q96NT3 240 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 MRIQ9BWK5 157 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 DDX4Q9NQI0 724 aaKnown RBP10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 SMC4Q9NTJ3 1288 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 BIN2Q9UBW5 565 aaPredicted RBP10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 LRRFIP2Q9Y608 721 aaKnown RBP10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 ZHX2Q9Y6X8 837 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 KIF16BQ96L93 1317 aa10.79□□□□□ -0.68
SHKBP1-220ENST00000599716 DDTLA6NHG4 134 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 PHF20L1A8MW92 1017 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 UBTFL1P0CB47 393 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 GRK4P32298 578 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 GJA8P48165 433 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 SLFN5Q08AF3 891 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 MAP3K12Q12852 859 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 ZSCAN29Q8IWY8 852 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 HOOK2Q96ED9 719 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 UNC93B1Q9H1C4 597 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 ABCF2Q9UG63 623 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 TAOK2Q9UL54 1235 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 SUGT1Q9Y2Z0 365 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 PTPRFP10586 1907 aa10.78□□□□□ -0.68
SHKBP1-220ENST00000599716 DOCK3Q8IZD9 2030 aa10.77□□□□□ -0.68
SHKBP1-220ENST00000599716 PHIPQ8WWQ0 1821 aa10.77□□□□□ -0.68
SHKBP1-220ENST00000599716 TRIM75PA6NK02 468 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 GJB1P08034 283 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 BCRP11274 1271 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 TIMM10P62072 90 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 RASGRF1Q13972 1273 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 NOL9Q5SY16 702 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 CCDC102BQ68D86 513 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 FAM109BQ6ICB4 259 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 PI16Q6UXB8 463 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 TDHQ8IZJ6 230 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 MEIS3Q99687 375 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 RNF208Q9H0X6 261 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 ZCCHC17Q9NP64 241 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 CEP126Q9P2H0 1117 aa10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 NOB1Q9ULX3 412 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 ARIH1Q9Y4X5 557 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-220ENST00000599716 E9PSI1 815 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 FARP2O94887 1054 aaPredicted RBP10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 PTPRAP18433 802 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 BTDP43251 543 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 SCYL3Q8IZE3 742 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 ZNF384Q8TF68 577 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 PARK7Q99497 189 aaKnown RBP10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 TNNQ9UQP3 1299 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 DOCK1Q14185 1865 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 RFX7Q2KHR2 1363 aa10.76□□□□□ -0.69
SHKBP1-220ENST00000599716 A0A0G2JLL6 359 aaPredicted RBP10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 PEX10O60683 326 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 GNRH1P01148 92 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 FLT3LGP49771 235 aa10.75□□□□□ -0.69
SHKBP1-220ENST00000599716 FCGRTP55899 365 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms