RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 AEBP2Q6ZN18 517 aaPredicted RBP16.89■□□□□ 0.29
VRK3-217ENST00000599538 PDLIM2Q96JY6 352 aa16.89■□□□□ 0.29
VRK3-217ENST00000599538 ANAPC4Q9UJX5 808 aa16.89■□□□□ 0.29
VRK3-217ENST00000599538 SLC12A7Q9Y666 1083 aa16.89■□□□□ 0.29
VRK3-217ENST00000599538 MYH2Q9UKX2 1941 aa16.89■□□□□ 0.29
VRK3-217ENST00000599538 CCDC69A6NI79 296 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 GPSM2P81274 684 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 CRY2Q49AN0 593 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 CTR9Q6PD62 1173 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 CKAP2LQ8IYA6 745 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 ALG1Q9BT22 464 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 NUP62CLQ9H1M0 184 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 PDS5AQ29RF7 1337 aaKnown RBP16.88■□□□□ 0.29
VRK3-217ENST00000599538 USP17L12C9JPN9 530 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 USP17L21D6R901 530 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 WTAPQ15007 396 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 CMTR1Q8N1G2 835 aaKnown RBP16.88■□□□□ 0.29
VRK3-217ENST00000599538 RPGRQ92834 1020 aaKnown RBP16.88■□□□□ 0.29
VRK3-217ENST00000599538 TRIM44Q96DX7 344 aaPredicted RBP16.88■□□□□ 0.29
VRK3-217ENST00000599538 CLIC4Q9Y696 253 aa16.88■□□□□ 0.29
VRK3-217ENST00000599538 KIF23Q02241 960 aaPredicted RBP16.87■□□□□ 0.29
VRK3-217ENST00000599538 BRIP1Q9BX63 1249 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 GOLPH3LQ9H4A5 285 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 ECM29Q5VYK3 1845 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 POLRMTO00411 1230 aaKnown RBP16.87■□□□□ 0.29
VRK3-217ENST00000599538 GUCY1A2P33402 732 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 CCDC82Q8N4S0 544 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 ZNF396Q96N95 335 aaPredicted RBP16.87■□□□□ 0.29
VRK3-217ENST00000599538 RNF41Q9H4P4 317 aaPredicted RBP16.87■□□□□ 0.29
VRK3-217ENST00000599538 LEMD3Q9Y2U8 911 aa16.87■□□□□ 0.29
VRK3-217ENST00000599538 XDHP47989 1333 aa16.86■□□□□ 0.29
VRK3-217ENST00000599538 CYP2D6P10635 497 aa16.86■□□□□ 0.29
VRK3-217ENST00000599538 IARSP41252 1262 aaKnown RBP16.86■□□□□ 0.29
VRK3-217ENST00000599538 SEC23AQ15436 765 aa16.86■□□□□ 0.29
VRK3-217ENST00000599538 SLC4A8Q2Y0W8 1093 aa16.86■□□□□ 0.29
VRK3-217ENST00000599538 TDRD7Q8NHU6 1098 aaKnown RBP16.86■□□□□ 0.29
VRK3-217ENST00000599538 DCP1AQ9NPI6 582 aaPredicted RBP16.86■□□□□ 0.29
VRK3-217ENST00000599538 ST5P78524 1137 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 MAP3K11Q16584 847 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 ZNF827Q17R98 1081 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 MYSM1Q5VVJ2 828 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 KRT40Q6A162 431 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 SLC26A6Q9BXS9 759 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 TNMDQ9H2S6 317 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 TNKSO95271 1327 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 DUOX1Q9NRD9 1551 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 CDKL5O76039 1030 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 CCAR1Q8IX12 1150 aaKnown RBP16.85■□□□□ 0.29
VRK3-217ENST00000599538 ESR2Q92731 530 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 CLSTN2Q9H4D0 955 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 RTEL1Q9NZ71 1219 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 CCDC88AQ3V6T2 1871 aa16.85■□□□□ 0.29
VRK3-217ENST00000599538 ESPNB1AK53 854 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 SART3Q15020 963 aaKnown RBP16.84■□□□□ 0.29
VRK3-217ENST00000599538 DIXDC1Q155Q3 683 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 DZIP1Q86YF9 867 aaKnown RBP16.84■□□□□ 0.29
VRK3-217ENST00000599538 ZNF654Q8IZM8 581 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 LINC00301Q8NCQ3 95 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 NUP133Q8WUM0 1156 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 UBAC1Q9BSL1 405 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 DDX19AQ9NUU7 478 aaKnown RBP16.84■□□□□ 0.29
VRK3-217ENST00000599538 PCDHA7Q9UN72 937 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 ERICH2A1L162 156 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 UFL1O94874 794 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 ME1P48163 572 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 ATL3Q6DD88 541 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 CPLX2Q6PUV4 134 aaKnown RBP16.84■□□□□ 0.29
VRK3-217ENST00000599538 ENAHQ8N8S7 591 aaPredicted RBP16.84■□□□□ 0.29
VRK3-217ENST00000599538 USP25Q9UHP3 1055 aa16.84■□□□□ 0.29
VRK3-217ENST00000599538 IFNAR1P17181 557 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 SNW1Q13573 536 aaKnown RBP16.83■□□□□ 0.28
VRK3-217ENST00000599538 NID2Q14112 1375 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 RTN1Q16799 776 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 SYNE3Q6ZMZ3 975 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 RBM43Q6ZSC3 357 aaKnown RBP16.83■□□□□ 0.28
VRK3-217ENST00000599538 NBPF11Q86T75 865 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 CRNKL1Q9BZJ0 848 aaKnown RBP16.83■□□□□ 0.28
VRK3-217ENST00000599538 MRVI1Q9Y6F6 885 aa16.83■□□□□ 0.28
VRK3-217ENST00000599538 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 NMT2O60551 498 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 FMNL1O95466 1100 aaPredicted RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 LDHBP07195 334 aaKnown RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 FGRP09769 529 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 TYRO3Q06418 890 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 SSRP1Q08945 709 aaKnown RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 BRAPQ7Z569 592 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 FANCBQ8NB91 859 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 POLLQ9UGP5 575 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.82■□□□□ 0.28
VRK3-217ENST00000599538 AP5Z1O43299 807 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 USP17L8P0C7I0 530 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 CCDC192P0DO97 292 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 ENGASEQ8NFI3 743 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 RBM17Q96I25 401 aaKnown RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 ZSCAN10Q96SZ4 725 aaPredicted RBP16.82■□□□□ 0.28
VRK3-217ENST00000599538 CD209Q9NNX6 404 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 MAST2Q6P0Q8 1798 aa16.82■□□□□ 0.28
VRK3-217ENST00000599538 FAM47AQ5JRC9 791 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 ZNF804AQ7Z570 1209 aa16.81■□□□□ 0.28
VRK3-217ENST00000599538 COL23A1Q86Y22 540 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms