RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 LRRCC1Q9C099 1032 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 ANTXR1Q9H6X2 564 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 ELP3Q9H9T3 547 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 SNCAIPQ9Y6H5 919 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 NDUFB9Q9Y6M9 179 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 CDK5RAP2Q96SN8 1893 aa11.84□□□□□ -0.51
VRK3-215ENST00000599138 COL2A1P02458 1487 aaPredicted RBP11.83□□□□□ -0.52
VRK3-215ENST00000599138 TESPA1A2RU30 521 aaPredicted RBP11.83□□□□□ -0.52
VRK3-215ENST00000599138 DDTLA6NHG4 134 aaPredicted RBP11.83□□□□□ -0.52
VRK3-215ENST00000599138 SPDYE5A6NIY4 337 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 MS4A4AQ96JQ5 239 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 WRNIP1Q96S55 665 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 CFHR5Q9BXR6 569 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 CSADQ9Y600 493 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 FOCADQ5VW36 1801 aa11.83□□□□□ -0.52
VRK3-215ENST00000599138 PHF20L1A8MW92 1017 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 SMARCA5O60264 1052 aaPredicted RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 IDH1O75874 414 aaKnown RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 BAG3O95817 575 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 PLCG2P16885 1265 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 ATP5JP18859 108 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 INPP5BP32019 993 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 PICALMQ13492 652 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 TTF1Q15361 905 aaPredicted RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 NOL9Q5SY16 702 aaKnown RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 ERO1BQ86YB8 467 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 TEX11Q8IYF3 940 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 TNS4Q8IZW8 715 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 SH3RF3Q8TEJ3 882 aaPredicted RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 ZKSCAN4Q969J2 545 aaPredicted RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 OPTNQ96CV9 577 aa11.82□□□□□ -0.52
VRK3-215ENST00000599138 OSBPL5Q9H0X9 879 aaPredicted RBP11.82□□□□□ -0.52
VRK3-215ENST00000599138 AATFQ9NY61 560 aaKnown RBP eCLIP11.82□□□□□ -0.52
VRK3-215ENST00000599138 IGF2BP3O00425 579 aaKnown RBP eCLIP11.81□□□□□ -0.52
VRK3-215ENST00000599138 TBC1D12O60347 775 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 CYP7A1P22680 504 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 MAP3K12Q12852 859 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 AAMPQ13685 434 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 NOM1Q5C9Z4 860 aaKnown RBP11.81□□□□□ -0.52
VRK3-215ENST00000599138 IFFO2Q5TF58 517 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 IFNL1Q8IU54 200 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 MAGEB6Q8N7X4 407 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 PTPN18Q99952 460 aa11.81□□□□□ -0.52
VRK3-215ENST00000599138 NOL10Q9BSC4 688 aaKnown RBP11.81□□□□□ -0.52
VRK3-215ENST00000599138 ALDH1A1P00352 501 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 PPATQ06203 517 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 PPIL2Q13356 520 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 ZSCAN29Q8IWY8 852 aaPredicted RBP11.8□□□□□ -0.52
VRK3-215ENST00000599138 BRI3BPQ8WY22 251 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 OTUD5Q96G74 571 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 HAUS7Q99871 368 aa11.8□□□□□ -0.52
VRK3-215ENST00000599138 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.8□□□□□ -0.52
VRK3-215ENST00000599138 SIPA1L1O43166 1804 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 TCRBV5S4A2TA0A5A2 114 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 GOLIM4O00461 696 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 IRF6O14896 467 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 TBC1D8O95759 1140 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 SLURP2P0DP57 97 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 PDE6AP16499 860 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 GTF2A2P52657 109 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 DYNLL1P63167 89 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 HDAC1Q13547 482 aaPredicted RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 METTL16Q86W50 562 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 CERS3Q8IU89 383 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 EDC3Q96F86 508 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 DNAJC2Q99543 621 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 RIOK1Q9BRS2 568 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 DHX36Q9H2U1 1008 aaKnown RBP11.79□□□□□ -0.52
VRK3-215ENST00000599138 BOLA2Q9H3K6 86 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 R3HDMLQ9H3Y0 253 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 ECHDC1Q9NTX5 307 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 PAG1Q9NWQ8 432 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 KCNH4Q9UQ05 1017 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 FLT1P17948 1338 aa11.79□□□□□ -0.52
VRK3-215ENST00000599138 MYH7P12883 1935 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 CTNND1O60716 968 aaKnown RBP11.78□□□□□ -0.52
VRK3-215ENST00000599138 SLC9C2Q5TAH2 1124 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 MAPKAPK5Q8IW41 473 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 SCYL3Q8IZE3 742 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 MIGA1Q8NAN2 632 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 TGFBRAP1Q8WUH2 860 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 BCL11AQ9H165 835 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 PI4KBQ9UBF8 816 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 MYH1P12882 1939 aa11.78□□□□□ -0.52
VRK3-215ENST00000599138 PHIPQ8WWQ0 1821 aa11.77□□□□□ -0.52
VRK3-215ENST00000599138 DOCK1Q14185 1865 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 CCL15-CCL14A0A0B4J2E2 113 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 GPR25O00155 361 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 CETPP11597 493 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 SNAPC2Q13487 334 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 CCL15Q16663 113 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 OTUD7BQ6GQQ9 843 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 ZNF296Q8WUU4 475 aaPredicted RBP11.77□□□□□ -0.53
VRK3-215ENST00000599138 HERC5Q9UII4 1024 aaKnown RBP11.77□□□□□ -0.53
VRK3-215ENST00000599138 ZNF532Q9HCE3 1301 aa11.77□□□□□ -0.53
VRK3-215ENST00000599138 PTPRFP10586 1907 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 CXCL11O14625 94 aa11.76□□□□□ -0.53
VRK3-215ENST00000599138 PTPRAP18433 802 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms