RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 DOCK2Q92608 1830 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 MAGEB6P1A0A0J9YX57 407 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 FAM155AB1AL88 458 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 AOC2O75106 756 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 UBE3CQ15386 1083 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 RGMBQ6NW40 437 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 OSBP2Q969R2 916 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 HHIPL1Q96JK4 782 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 CAPNS2Q96L46 248 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 OSBPL5Q9H0X9 879 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 ARMT1Q9H993 441 aa17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 WDR33Q9C0J8 1336 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-217ENST00000598558 RPAP1Q9BWH6 1393 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 RNF113AO15541 343 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 PRKAB2O43741 272 aa17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 GRM1Q13255 1194 aa17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 TMED8Q6PL24 325 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 ARMC9Q7Z3E5 817 aa17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 NOL10Q9BSC4 688 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 FLT1P17948 1338 aa17.19■□□□□ 0.34
SHKBP1-217ENST00000598558 MAST2Q6P0Q8 1798 aa17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 PPP1R12BO60237 982 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 MBD4O95243 580 aa17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 PLCG2P16885 1265 aa17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 MAP3K10Q02779 954 aa17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 EVX2Q03828 476 aa17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 PAXIP1Q6ZW49 1069 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 SEC62Q99442 399 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.18■□□□□ 0.342e-8■■■■■ 26.9
SHKBP1-217ENST00000598558 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 SAP30BPQ9UHR5 308 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-217ENST00000598558 PAPPA2Q9BXP8 1791 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 FAM196BA6NMK8 535 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 ZNF157P51786 506 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 RASAL3Q86YV0 1011 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 ZSCAN29Q8IWY8 852 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 JMYQ8N9B5 988 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 CSRNP1Q96S65 589 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 ZNF112Q9UJU3 913 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 PALD1Q9ULE6 856 aa17.17■□□□□ 0.34
SHKBP1-217ENST00000598558 PHF20L1A8MW92 1017 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 M0R2C6 588 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 NEFLP07196 543 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 INPP5BP32019 993 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 GJA5P36382 358 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 RRP1BQ14684 758 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 SLC4A8Q2Y0W8 1093 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 ZSCAN25Q6NSZ9 544 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 SDR42E1Q8WUS8 393 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 CNKSR2Q8WXI2 1034 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 ZKSCAN4Q969J2 545 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 EVI5LQ96CN4 794 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 FSD1Q9BTV5 496 aa17.16■□□□□ 0.34
SHKBP1-217ENST00000598558 SMIM22K7EJ46 135 aa17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 SLC10A3P09131 477 aa17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 GSPT1P15170 499 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 IREB2P48200 963 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 MAP3K9P80192 1104 aa17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 ZMYM1Q5SVZ6 1142 aa17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 CENPQQ7L2Z9 268 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 APPBP2Q92624 585 aa17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 STRBPQ96SI9 672 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-217ENST00000598558 USP5P45974 858 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 MKRN3Q13064 507 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 VGLL4Q14135 290 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 SLC10A4Q96EP9 437 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 WRNIP1Q96S55 665 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 ZNF341Q9BYN7 854 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 DNAJC18Q9H819 358 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 ELP3Q9H9T3 547 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 DCP1AQ9NPI6 582 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 SNCAIPQ9Y6H5 919 aa17.14■□□□□ 0.33
SHKBP1-217ENST00000598558 TRIM6-TRIM34B2RNG4 842 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 ZFYP08048 801 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 CYP2D6P10635 497 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 ECE1P42892 770 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 PLCD1P51178 756 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 JAG1P78504 1218 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 KIF23Q02241 960 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 DCAF15Q66K64 600 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 ANKRD13AQ8IZ07 590 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 RILPL2Q969X0 211 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 CCDC102AQ96A19 550 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 CCDC136Q96JN2 1154 aa17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 CRNKL1Q9BZJ0 848 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-217ENST00000598558 COL2A1P02458 1487 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 TBC1D12O60347 775 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 TTC22Q5TAA0 569 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 SPRYD7Q5W111 196 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 CCDC129Q6ZRS4 1044 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 METTL16Q86W50 562 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 CERS3Q8IU89 383 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 AIDAQ96BJ3 306 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 FAM227BQ96M60 508 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 SLC4A4Q9Y6R1 1079 aa17.12■□□□□ 0.33
SHKBP1-217ENST00000598558 CYP2D7A0A087X1C5 515 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms