RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 DOCK2Q92608 1830 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 MAST2Q6P0Q8 1798 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 NPM3O75607 178 aaKnown RBP13.56□□□□□ -0.24
VRK3-210ENST00000596121 IREB2P48200 963 aaKnown RBP13.56□□□□□ -0.24
VRK3-210ENST00000596121 MAP3K9P80192 1104 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 MAP3K12Q12852 859 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 SLC9C2Q5TAH2 1124 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 SPRYD7Q5W111 196 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 TEX11Q8IYF3 940 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 PI4K2BQ8TCG2 481 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 GCC1Q96CN9 775 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 SLC10A4Q96EP9 437 aa13.56□□□□□ -0.24
VRK3-210ENST00000596121 OTOFQ9HC10 1997 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 IGSF3O75054 1194 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 INPP5BP32019 993 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 MAP2K1Q02750 393 aaPredicted RBP13.55□□□□□ -0.24
VRK3-210ENST00000596121 MAP3K10Q02779 954 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 VGLL4Q14135 290 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 TTF1Q15361 905 aaPredicted RBP13.55□□□□□ -0.24
VRK3-210ENST00000596121 B4GALNT3Q6L9W6 998 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 ANKRD13AQ8IZ07 590 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 ZKSCAN4Q969J2 545 aaPredicted RBP13.55□□□□□ -0.24
VRK3-210ENST00000596121 WNK4Q96J92 1243 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 RIOK1Q9BRS2 568 aaKnown RBP13.55□□□□□ -0.24
VRK3-210ENST00000596121 RWDD1Q9H446 243 aaPredicted RBP13.55□□□□□ -0.24
VRK3-210ENST00000596121 ELP3Q9H9T3 547 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 ZNF112Q9UJU3 913 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 SNCAIPQ9Y6H5 919 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 ZNF532Q9HCE3 1301 aa13.55□□□□□ -0.24
VRK3-210ENST00000596121 PHF20L1A8MW92 1017 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 BAG3O95817 575 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 MAP4K4O95819 1239 aaPredicted RBP13.54□□□□□ -0.24
VRK3-210ENST00000596121 MAPKAPK5Q8IW41 473 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 TGFBRAP1Q8WUH2 860 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 WRNIP1Q96S55 665 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 ZNF341Q9BYN7 854 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 OSBPL5Q9H0X9 879 aaPredicted RBP13.54□□□□□ -0.24
VRK3-210ENST00000596121 TSKSQ9UJT2 592 aa13.54□□□□□ -0.24
VRK3-210ENST00000596121 UNCXA6NJT0 531 aa13.53□□□□□ -0.24
VRK3-210ENST00000596121 FAM196BA6NMK8 535 aa13.53□□□□□ -0.24
VRK3-210ENST00000596121 HSPA8P11142 646 aaKnown RBP13.53□□□□□ -0.24
VRK3-210ENST00000596121 ADD2P35612 726 aa13.53□□□□□ -0.24
VRK3-210ENST00000596121 RRP1BQ14684 758 aaKnown RBP13.53□□□□□ -0.24
VRK3-210ENST00000596121 ZSCAN29Q8IWY8 852 aaPredicted RBP13.53□□□□□ -0.24
VRK3-210ENST00000596121 FLT1P17948 1338 aa13.53□□□□□ -0.24
VRK3-210ENST00000596121 MX1P20591 662 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 TM4SF4P48230 202 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 NUCB1Q02818 461 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 EVX2Q03828 476 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 DCAF15Q66K64 600 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 LCORLQ8N3X6 602 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 OPTNQ96CV9 577 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 NOL10Q9BSC4 688 aaKnown RBP13.52□□□□□ -0.25
VRK3-210ENST00000596121 LNPKQ9C0E8 428 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 RNF186Q9NXI6 227 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 STAP2Q9UGK3 403 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 PALD1Q9ULE6 856 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 TTC41PQ6P2S7 1318 aa13.52□□□□□ -0.25
VRK3-210ENST00000596121 AK9Q5TCS8 1911 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 CDK5RAP2Q96SN8 1893 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 COL2A1P02458 1487 aaPredicted RBP13.51□□□□□ -0.25
VRK3-210ENST00000596121 MAGEB6P1A0A0J9YX57 407 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 PRKAB2O43741 272 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 PLCG2P16885 1265 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 PDE1AP54750 535 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 KBTBD3Q8NAB2 608 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 HOOK2Q96ED9 719 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 GPATCH3Q96I76 525 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 MS4A4AQ96JQ5 239 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 DNAJC18Q9H819 358 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 ARMT1Q9H993 441 aa13.51□□□□□ -0.25
VRK3-210ENST00000596121 SAP30BPQ9UHR5 308 aaKnown RBP13.51□□□□□ -0.25
VRK3-210ENST00000596121 SPDYE5A6NIY4 337 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 TBC1D12O60347 775 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 ZBTB48P10074 688 aaPredicted RBP13.5□□□□□ -0.25
VRK3-210ENST00000596121 LBX1P52954 281 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 JAG1P78504 1218 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 UBE3CQ15386 1083 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 SLC4A8Q2Y0W8 1093 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 COL13A1Q5TAT6 717 aaPredicted RBP13.5□□□□□ -0.25
VRK3-210ENST00000596121 TMED8Q6PL24 325 aaPredicted RBP13.5□□□□□ -0.25
VRK3-210ENST00000596121 CHD1LQ86WJ1 897 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 AIDAQ96BJ3 306 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 PTPN18Q99952 460 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 PUS7LQ9H0K6 701 aaKnown RBP13.5□□□□□ -0.25
VRK3-210ENST00000596121 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.5□□□□□ -0.25
VRK3-210ENST00000596121 CSADQ9Y600 493 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 SIPA1L1O43166 1804 aa13.5□□□□□ -0.25
VRK3-210ENST00000596121 IGF2BP3O00425 579 aaKnown RBP eCLIP13.49□□□□□ -0.25
VRK3-210ENST00000596121 TRPA1O75762 1119 aa13.49□□□□□ -0.25
VRK3-210ENST00000596121 GLRX3O76003 335 aaKnown RBP13.49□□□□□ -0.25
VRK3-210ENST00000596121 MBD4O95243 580 aa13.49□□□□□ -0.25
VRK3-210ENST00000596121 CTCFP49711 727 aaPredicted RBP13.49□□□□□ -0.25
VRK3-210ENST00000596121 SHROOM1Q2M3G4 852 aaPredicted RBP13.49□□□□□ -0.25
VRK3-210ENST00000596121 NOL9Q5SY16 702 aaKnown RBP13.49□□□□□ -0.25
VRK3-210ENST00000596121 METTL16Q86W50 562 aaKnown RBP13.49□□□□□ -0.25
VRK3-210ENST00000596121 PLEKHM2Q8IWE5 1019 aa13.49□□□□□ -0.25
VRK3-210ENST00000596121 R3HDMLQ9H3Y0 253 aa13.49□□□□□ -0.25
VRK3-210ENST00000596121 FOCADQ5VW36 1801 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms