RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 CDK5RAP2Q96SN8 1893 aa14.59□□□□□ -0.07
CLIP3-204ENST00000590559 A0A1B0GUL7 405 aa14.58□□□□□ -0.08
CLIP3-204ENST00000590559 DDTLA6NHG4 134 aaPredicted RBP14.58□□□□□ -0.08
CLIP3-204ENST00000590559 SRRDQ9UH36 339 aa14.58□□□□□ -0.08
CLIP3-204ENST00000590559 CPA4Q9UI42 421 aa14.58□□□□□ -0.08
CLIP3-204ENST00000590559 CEP290O15078 2479 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 SIPA1L1O43166 1804 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 A0A0G2JLL6 359 aaPredicted RBP14.57□□□□□ -0.08
CLIP3-204ENST00000590559 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
CLIP3-204ENST00000590559 SLURP2P0DP57 97 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 PTPRAP18433 802 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 PSMC4P43686 418 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 RHBDL3P58872 404 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 TFCP2Q12800 502 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 HABP4Q5JVS0 413 aaKnown RBP14.57□□□□□ -0.08
CLIP3-204ENST00000590559 PRRT2Q7Z6L0 340 aaPredicted RBP14.57□□□□□ -0.08
CLIP3-204ENST00000590559 SCYL3Q8IZE3 742 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 XAGE2Q96GT9 111 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 AFG3L2Q9Y4W6 797 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 LOC285556D6RIA3 1793 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 FOCADQ5VW36 1801 aa14.57□□□□□ -0.08
CLIP3-204ENST00000590559 MYO5AQ9Y4I1 1855 aaKnown RBP14.57□□□□□ -0.08
CLIP3-204ENST00000590559 DOCK3Q8IZD9 2030 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 GPR75-ASB3A0A0A6YYF3 556 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 CCER2I3L3R5 266 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 GNAI3P08754 354 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 OSBPP22059 807 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 SHISA4Q96DD7 197 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 MROH7-TTC4A0A0A0MT08 1334 aa14.56□□□□□ -0.08
CLIP3-204ENST00000590559 COL2A1P02458 1487 aaPredicted RBP14.56□□□□□ -0.08
CLIP3-204ENST00000590559 SRGAP3O43295 1099 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 TBC1D12O60347 775 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 MECOMQ03112 1051 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 MTFR1Q15390 333 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 SLC4A8Q2Y0W8 1093 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 SPTY2D1Q68D10 685 aaPredicted RBP14.55□□□□□ -0.08
CLIP3-204ENST00000590559 UBE2Q1Q7Z7E8 422 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 SLF2Q8IX21 1173 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 HMG20BQ9P0W2 317 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 AKAP2Q9Y2D5 859 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 SLC45A1Q9Y2W3 748 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 ZHX2Q9Y6X8 837 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 MAST2Q6P0Q8 1798 aa14.55□□□□□ -0.08
CLIP3-204ENST00000590559 CTNND1O60716 968 aaKnown RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 CYP2C8P10632 490 aa14.54□□□□□ -0.08
CLIP3-204ENST00000590559 TRIM27P14373 513 aa14.54□□□□□ -0.08
CLIP3-204ENST00000590559 ARID4AP29374 1257 aaPredicted RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 BTDP43251 543 aa14.54□□□□□ -0.08
CLIP3-204ENST00000590559 MVPQ14764 893 aaKnown RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 DZIP1Q86YF9 867 aaKnown RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 NSUN4Q96CB9 384 aaKnown RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 PARK7Q99497 189 aaKnown RBP14.54□□□□□ -0.08
CLIP3-204ENST00000590559 ABCF2Q9UG63 623 aa14.54□□□□□ -0.08
CLIP3-204ENST00000590559 TNNQ9UQP3 1299 aa14.54□□□□□ -0.08
CLIP3-204ENST00000590559 MYPNQ86TC9 1320 aa14.53□□□□□ -0.08
CLIP3-204ENST00000590559 MAP4K4O95819 1239 aaPredicted RBP14.53□□□□□ -0.08
CLIP3-204ENST00000590559 HOXD10P28358 340 aa14.53□□□□□ -0.08
CLIP3-204ENST00000590559 GRK4P32298 578 aa14.53□□□□□ -0.08
CLIP3-204ENST00000590559 PI16Q6UXB8 463 aa14.53□□□□□ -0.08
CLIP3-204ENST00000590559 ERICH6Q7L0X2 663 aa14.53□□□□□ -0.08
CLIP3-204ENST00000590559 FASTKD5Q7L8L6 764 aaKnown RBP14.53□□□□□ -0.08
CLIP3-204ENST00000590559 PNMA6EA0A0J9YXQ4 647 aa14.52□□□□□ -0.09
CLIP3-204ENST00000590559 MYCP01106 439 aaPredicted RBP14.52□□□□□ -0.09
CLIP3-204ENST00000590559 PRKCZQ05513 592 aa14.52□□□□□ -0.09
CLIP3-204ENST00000590559 SPATA5Q8NB90 893 aa14.52□□□□□ -0.09
CLIP3-204ENST00000590559 PICK1Q9NRD5 415 aa14.52□□□□□ -0.09
CLIP3-204ENST00000590559 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.52□□□□□ -0.09
CLIP3-204ENST00000590559 LAMA3Q16787 3333 aa14.52□□□□□ -0.09
CLIP3-204ENST00000590559 PLXNB2O15031 1838 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 BCAR3O75815 825 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 FMNL1O95466 1100 aaPredicted RBP14.51□□□□□ -0.09
CLIP3-204ENST00000590559 MCAMP43121 646 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 GJA8P48165 433 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 FXR1P51114 621 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLIP3-204ENST00000590559 ATF7IPQ6VMQ6 1270 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 GABRQQ9UN88 632 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 DNAH12Q6ZR08 3092 aa14.51□□□□□ -0.09
CLIP3-204ENST00000590559 ECM2O94769 699 aaPredicted RBP14.5□□□□□ -0.09
CLIP3-204ENST00000590559 GNAI2P04899 355 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 GJB1P08034 283 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 CCL5P13501 91 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 FCGRTP55899 365 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 PICALMQ13492 652 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 POLA2Q14181 598 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 RRP1BQ14684 758 aaKnown RBP14.5□□□□□ -0.09
CLIP3-204ENST00000590559 TBC1D9Q6ZT07 1266 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 ZSCAN29Q8IWY8 852 aaPredicted RBP14.5□□□□□ -0.09
CLIP3-204ENST00000590559 RAET1EQ8TD07 263 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 NEUROD6Q96NK8 337 aa14.5□□□□□ -0.09
CLIP3-204ENST00000590559 OSBPL5Q9H0X9 879 aaPredicted RBP14.5□□□□□ -0.09
CLIP3-204ENST00000590559 COLQQ9Y215 455 aaPredicted RBP14.5□□□□□ -0.09
CLIP3-204ENST00000590559 IPO8O15397 1037 aaKnown RBP14.49□□□□□ -0.09
CLIP3-204ENST00000590559 LDHCP07864 332 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 GADL1Q6ZQY3 521 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 CCDC84Q86UT8 332 aaPredicted RBP14.49□□□□□ -0.09
CLIP3-204ENST00000590559 SLAIN1Q8ND83 568 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 NKX2-3Q8TAU0 364 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 GPR108Q9NPR9 543 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 AGTPBP1Q9UPW5 1226 aa14.49□□□□□ -0.09
CLIP3-204ENST00000590559 ALPK3Q96L96 1907 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms