RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 WASF1Q92558 559 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 FUCA2Q9BTY2 467 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 LRRC2Q9BYS8 371 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 NYXQ9GZU5 481 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 PUS7LQ9H0K6 701 aaKnown RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 RNF41Q9H4P4 317 aaPredicted RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 TAF1DQ9H5J8 278 aaPredicted RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 USP25Q9UHP3 1055 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 RCOR1Q9UKL0 485 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 ANGEL1Q9UNK9 670 aaKnown RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 NIP7Q9Y221 180 aaKnown RBP eCLIP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 PASKQ96RG2 1323 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 ZNF532Q9HCE3 1301 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 PATL2C9JE40 543 aaKnown RBP12.36□□□□□ -0.43
ZNF540-208ENST00000589857 KDM4AO75164 1064 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 NTSR2O95665 410 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 NPR1P16066 1061 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 RCAN1P53805 252 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 TERF1P54274 439 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 GRIPAP1Q4V328 841 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 KCNG4Q8TDN1 519 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 JDP2Q8WYK2 163 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 C8orf76Q96K31 380 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 WBP1LQ9NX94 342 aa12.36□□□□□ -0.43
ZNF540-208ENST00000589857 PCNTO95613 3336 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 NRXN2Q9P2S2 1712 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 KINO60870 393 aaKnown RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 YEATS4O95619 227 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TPM2P07951 284 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 HCLS1P14317 486 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 GTF2E1P29083 439 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 LMOD1P29536 600 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 ECE1P42892 770 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 PHKA1P46020 1223 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 VEGFBP49765 207 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 CCT2P78371 535 aaKnown RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TYRO3Q06418 890 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TRIM29Q14134 588 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TTLL5Q6EMB2 1281 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 GIMAP6Q6P9H5 292 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 ANKRD18AQ8IVF6 992 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TMTC2Q8N394 836 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 NAP1L5Q96NT1 182 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 NAPBQ9H115 298 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 TMX4Q9H1E5 349 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 PIH1D3Q9NQM4 214 aaKnown RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 DACT1Q9NYF0 836 aa12.35□□□□□ -0.43
ZNF540-208ENST00000589857 ORC3Q9UBD5 711 aaPredicted RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 ABT1Q9ULW3 272 aaKnown RBP12.35□□□□□ -0.43
ZNF540-208ENST00000589857 A0A1W2PQ27 194 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 A0A1W2PQ64 194 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 A0A1W2PQD8 194 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 ERICH2A1L162 156 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 SEMA3EO15041 775 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 OFD1O75665 1012 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 CTDNEP1O95476 244 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 CHGBP05060 677 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 PCP11498 1178 aaKnown RBP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 EPHX2P34913 555 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 LIFRP42702 1097 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 NT5C2P49902 561 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 METAP2P50579 478 aaKnown RBP eCLIP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 HAND2P61296 217 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 UBE4AQ14139 1066 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 SF3A1Q15459 793 aaKnown RBP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 ZRSR1Q15695 479 aaKnown RBP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 CC2D2BQ6DHV5 1058 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 SYNE4Q8N205 404 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 STRBPQ96SI9 672 aaKnown RBP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 RTEL1Q9NZ71 1219 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 TFIP11Q9UBB9 837 aaKnown RBP12.34□□□□□ -0.43
ZNF540-208ENST00000589857 TIAM2Q8IVF5 1701 aa12.34□□□□□ -0.43
ZNF540-208ENST00000589857 DLEC1Q9Y238 1755 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 CCDC196A0A1B0GTZ2 297 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 TCRBV5S4A2TA0A5A2 114 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 RASSF10A6NK89 507 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 SH2B2O14492 632 aaPredicted RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 ADCY5O95622 1261 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 LIG1P18858 919 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 LBX1P52954 281 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 EIF6P56537 245 aaKnown RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 FAM160A1Q05DH4 1040 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 PPP2R5BQ15173 497 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 SF3B3Q15393 1217 aaKnown RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 CAVIN4Q5BKX8 364 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 SGMS1Q86VZ5 419 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 GPC2Q8N158 579 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 FBXO18Q8NFZ0 1043 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 NAT10Q9H0A0 1025 aaKnown RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 ARAP2Q8WZ64 1704 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 PDS5AQ29RF7 1337 aaKnown RBP12.33□□□□□ -0.44
ZNF540-208ENST00000589857 STK36Q9NRP7 1315 aa12.33□□□□□ -0.44
ZNF540-208ENST00000589857 CCDC69A6NI79 296 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 ZBTB22O15209 634 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 FOXP2O15409 715 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 ZBTB43O43298 467 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 ITGBL1O95965 494 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms