RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 NEXNQ0ZGT2 675 aa7.72□□□□□ -1.17
PTPRM-213ENST00000580949 TLR1Q15399 786 aa7.72□□□□□ -1.17
PTPRM-213ENST00000580949 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
PTPRM-213ENST00000580949 ZNF594Q96JF6 807 aaPredicted RBP7.72□□□□□ -1.17
PTPRM-213ENST00000580949 ZSCAN10Q96SZ4 725 aaPredicted RBP7.72□□□□□ -1.17
PTPRM-213ENST00000580949 SERTAD1Q9UHV2 236 aa7.72□□□□□ -1.17
PTPRM-213ENST00000580949 ZBTB1Q9Y2K1 713 aa7.72□□□□□ -1.17
PTPRM-213ENST00000580949 PALLDQ8WX93 1383 aa7.71□□□□□ -1.17
PTPRM-213ENST00000580949 ITGB4P16144 1822 aa7.71□□□□□ -1.17
PTPRM-213ENST00000580949 GTF2E1P29083 439 aaPredicted RBP7.71□□□□□ -1.18
PTPRM-213ENST00000580949 CRKLP46109 303 aaKnown RBP7.71□□□□□ -1.18
PTPRM-213ENST00000580949 KCNQ4P56696 695 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 TCIRG1Q13488 830 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 MTFR1Q15390 333 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 HLFQ16534 295 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 WDR44Q5JSH3 913 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 PRICKLE2Q7Z3G6 844 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 UBE3BQ7Z3V4 1068 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 SMARCC1Q92922 1105 aaPredicted RBP7.71□□□□□ -1.18
PTPRM-213ENST00000580949 PBXIP1Q96AQ6 731 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 ARID3AQ99856 593 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 ISCA1Q9BUE6 129 aa7.71□□□□□ -1.18
PTPRM-213ENST00000580949 BICC1Q9H694 974 aaKnown RBP7.71□□□□□ -1.18
PTPRM-213ENST00000580949 NOP58Q9Y2X3 529 aaKnown RBP7.71□□□□□ -1.18
PTPRM-213ENST00000580949 THSD7AQ9UPZ6 1657 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 N4BP2Q86UW6 1770 aaPredicted RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 A0A087WZG4 1122 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 A6NJY4 79 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 SURF6O75683 361 aaKnown RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 IL6STP40189 918 aaPredicted RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 EIF5P55010 431 aaKnown RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 SEC13P55735 322 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 FOXO4P98177 505 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 TRIM28Q13263 835 aaKnown RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 ANKMY2Q8IV38 441 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 BCL11AQ9H165 835 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 CCDC87Q9NVE4 849 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 PA2G4Q9UQ80 394 aaKnown RBP7.7□□□□□ -1.18
PTPRM-213ENST00000580949 MAP3K15Q6ZN16 1313 aa7.7□□□□□ -1.18
PTPRM-213ENST00000580949 DOT1LQ8TEK3 1739 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 LAMB4A4D0S4 1761 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 CDK2AP1O14519 115 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 RFX5P48382 616 aaPredicted RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 PTSQ03393 145 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 POU4F2Q12837 409 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 ELOAQ14241 798 aaKnown RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 RABL6Q3YEC7 729 aaPredicted RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 BMP2KLQ5H9B9 411 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 GNASQ5JWF2 1037 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 TMEM214Q6NUQ4 689 aaKnown RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 TAS1R3Q7RTX0 852 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 NPAS3Q8IXF0 933 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 SYNE4Q8N205 404 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 CCDC191Q8NCU4 936 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 LINC00116Q8NCU8 138 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 RHBDD1Q8TEB9 315 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 LRRCC1Q9C099 1032 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 CWC25Q9NXE8 425 aaPredicted RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 NXF1Q9UBU9 619 aaKnown RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 HDAC5Q9UQL6 1122 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 SALL3Q9BXA9 1300 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 COL15A1P39059 1388 aa7.69□□□□□ -1.18
PTPRM-213ENST00000580949 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.69□□□□□ -1.18
PTPRM-213ENST00000580949 SLC35F4A4IF30 521 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 SFI1A8K8P3 1242 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 ERVV-1B6SEH8 477 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 RAB11FIP3O75154 756 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 ATG7O95352 703 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 GSPT1P15170 499 aaKnown RBP7.68□□□□□ -1.18
PTPRM-213ENST00000580949 RHOQP17081 205 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 PDE1AP54750 535 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 EPHA4P54764 986 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 DPYDQ12882 1025 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 TTC22Q5TAA0 569 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 KIF6Q6ZMV9 814 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 SMIM5Q71RC9 77 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 NLRP10Q86W26 655 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 KLHDC4Q8TBB5 520 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 RHPN1Q8TCX5 695 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 IL1RAPL2Q9NP60 686 aa7.68□□□□□ -1.18
PTPRM-213ENST00000580949 IQSEC3Q9UPP2 1182 aaPredicted RBP7.68□□□□□ -1.18
PTPRM-213ENST00000580949 TJP1Q07157 1748 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 SASH1O94885 1247 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 CAMTA2O94983 1202 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 GPTP24298 496 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 FOXK2Q01167 660 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 TSHZ3Q63HK5 1081 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 LMBR1LQ6UX01 489 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 ZNF34Q8IZ26 560 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 FAM89AQ96GI7 184 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 SCHIP1Q9P0W5 487 aaPredicted RBP7.67□□□□□ -1.18
PTPRM-213ENST00000580949 STAP2Q9UGK3 403 aa7.67□□□□□ -1.18
PTPRM-213ENST00000580949 KAT6BQ8WYB5 2073 aa7.66□□□□□ -1.18
PTPRM-213ENST00000580949 PCCAP05165 728 aaPredicted RBP7.66□□□□□ -1.18
PTPRM-213ENST00000580949 PTPN12Q05209 780 aaKnown RBP7.66□□□□□ -1.18
PTPRM-213ENST00000580949 C4orf17Q53FE4 359 aa7.66□□□□□ -1.18
PTPRM-213ENST00000580949 NPM2Q86SE8 214 aaKnown RBP7.66□□□□□ -1.18
PTPRM-213ENST00000580949 AMIGO3Q86WK7 504 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms