RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ERO1BQ86YB8 467 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 KIF1BPQ96EK5 621 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 SNCAIPQ9Y6H5 919 aa12.36□□□□□ -0.43
SS18-210ENST00000578700 G3BP1Q13283 466 aaKnown RBP eCLIP12.35□□□□□ -0.43
SS18-210ENST00000578700 CAVIN4Q5BKX8 364 aa12.35□□□□□ -0.43
SS18-210ENST00000578700 RAET1EQ8TD07 263 aa12.35□□□□□ -0.43
SS18-210ENST00000578700 TEKT1Q969V4 418 aa12.35□□□□□ -0.43
SS18-210ENST00000578700 SUCLG2Q96I99 432 aa12.35□□□□□ -0.43
SS18-210ENST00000578700 BICC1Q9H694 974 aaKnown RBP12.35□□□□□ -0.43
SS18-210ENST00000578700 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
SS18-210ENST00000578700 HOXD10P28358 340 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 METTL24Q5JXM2 366 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 FBXO33Q7Z6M2 555 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 PLEKHM2Q8IWE5 1019 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 GPATCH3Q96I76 525 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 ZSWIM8A7E2V4 1837 aa12.34□□□□□ -0.43
SS18-210ENST00000578700 PDHXO00330 501 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 SMARCA5O60264 1052 aaPredicted RBP12.33□□□□□ -0.44
SS18-210ENST00000578700 GNRH1P01148 92 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 OSBPP22059 807 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 CTGFP29279 349 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 INPP5BP32019 993 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 GRK4P32298 578 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 BCAMP50895 628 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 PRMT2P55345 433 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 TCP10Q12799 353 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 PPIL2Q13356 520 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 LRRC24Q50LG9 513 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 DCAF15Q66K64 600 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 C17orf99Q6UX52 265 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 CLASRPQ8N2M8 674 aaKnown RBP12.33□□□□□ -0.44
SS18-210ENST00000578700 RHPN1Q8TCX5 695 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 TBC1D22AQ8WUA7 517 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 HOOK2Q96ED9 719 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 DDRGK1Q96HY6 314 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 TRIM47Q96LD4 638 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 ZNF341Q9BYN7 854 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 RNF208Q9H0X6 261 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 NOP58Q9Y2X3 529 aaKnown RBP12.33□□□□□ -0.44
SS18-210ENST00000578700 RIPOR2Q9Y4F9 1068 aa12.33□□□□□ -0.44
SS18-210ENST00000578700 CDC45O75419 566 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 CCL5P13501 91 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 MX1P20591 662 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
SS18-210ENST00000578700 TTC22Q5TAA0 569 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 SHISA4Q96DD7 197 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 ZCCHC17Q9NP64 241 aaKnown RBP12.32□□□□□ -0.44
SS18-210ENST00000578700 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
SS18-210ENST00000578700 MROH5Q6ZUA9 1318 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 LAMA3Q16787 3333 aa12.32□□□□□ -0.44
SS18-210ENST00000578700 PPATQ06203 517 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 APOBEC3HQ6NTF7 200 aaKnown RBP12.31□□□□□ -0.44
SS18-210ENST00000578700 FAM83AQ86UY5 434 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 ZDHHC15Q96MV8 337 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 HTATIP2Q9BUP3 242 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 MYPNQ86TC9 1320 aa12.31□□□□□ -0.44
SS18-210ENST00000578700 IFIT2P09913 472 aaKnown RBP12.3□□□□□ -0.44
SS18-210ENST00000578700 PDE1AP54750 535 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 UBXN2AP68543 259 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 RABL6Q3YEC7 729 aaPredicted RBP12.3□□□□□ -0.44
SS18-210ENST00000578700 ANKRD23Q86SG2 305 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 KLHDC4Q8TBB5 520 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 KAZALD1Q96I82 304 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 AK9Q5TCS8 1911 aa12.3□□□□□ -0.44
SS18-210ENST00000578700 MYH13Q9UKX3 1938 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 CUL9Q8IWT3 2517 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 ERC2O15083 957 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 PDE8BO95263 885 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 GJB1P08034 283 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 IFIT1P09914 478 aaKnown RBP12.29□□□□□ -0.44
SS18-210ENST00000578700 CYP2C8P10632 490 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 GJA8P48165 433 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 PRKCZQ05513 592 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 MRIQ9BWK5 157 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 IL1RAPL2Q9NP60 686 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 STAP2Q9UGK3 403 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 TAOK2Q9UL54 1235 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 GABRQQ9UN88 632 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 NR2E3Q9Y5X4 410 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 MAST3O60307 1309 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 MGAMO43451 1857 aa12.29□□□□□ -0.44
SS18-210ENST00000578700 DLL1O00548 723 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 TFRCP02786 760 aaKnown RBP12.28□□□□□ -0.44
SS18-210ENST00000578700 FCGRTP55899 365 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 FKBP1CQ5VVH2 108 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 HHIPL2Q6UWX4 724 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 FAM151AQ8WW52 585 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 IPO9Q96P70 1041 aaKnown RBP12.28□□□□□ -0.44
SS18-210ENST00000578700 UNC93B1Q9H1C4 597 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 COPRSQ9NQ92 184 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 TTC41PQ6P2S7 1318 aa12.28□□□□□ -0.44
SS18-210ENST00000578700 TRIM6-TRIM34B2RNG4 842 aa12.27□□□□□ -0.45
SS18-210ENST00000578700 NPM3O75607 178 aaKnown RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 FARP2O94887 1054 aaPredicted RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 MFAP1P55081 439 aaKnown RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 GADL1Q6ZQY3 521 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms