RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PDHXO00330 501 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 SMARCA5O60264 1052 aaPredicted RBP12.33□□□□□ -0.44
SS18-207ENST00000577636 GNRH1P01148 92 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 OSBPP22059 807 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 CTGFP29279 349 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 INPP5BP32019 993 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 GRK4P32298 578 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 BCAMP50895 628 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 PRMT2P55345 433 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 TCP10Q12799 353 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 PPIL2Q13356 520 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 LRRC24Q50LG9 513 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 DCAF15Q66K64 600 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 C17orf99Q6UX52 265 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 CLASRPQ8N2M8 674 aaKnown RBP12.33□□□□□ -0.44
SS18-207ENST00000577636 RHPN1Q8TCX5 695 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 TBC1D22AQ8WUA7 517 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 HOOK2Q96ED9 719 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 DDRGK1Q96HY6 314 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 TRIM47Q96LD4 638 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 ZNF341Q9BYN7 854 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 RNF208Q9H0X6 261 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 NOP58Q9Y2X3 529 aaKnown RBP12.33□□□□□ -0.44
SS18-207ENST00000577636 RIPOR2Q9Y4F9 1068 aa12.33□□□□□ -0.44
SS18-207ENST00000577636 CDC45O75419 566 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 CCL5P13501 91 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 MX1P20591 662 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
SS18-207ENST00000577636 TTC22Q5TAA0 569 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 SHISA4Q96DD7 197 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 ZCCHC17Q9NP64 241 aaKnown RBP12.32□□□□□ -0.44
SS18-207ENST00000577636 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
SS18-207ENST00000577636 MROH5Q6ZUA9 1318 aa12.32□□□□□ -0.44
SS18-207ENST00000577636 PPATQ06203 517 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 APOBEC3HQ6NTF7 200 aaKnown RBP12.31□□□□□ -0.44
SS18-207ENST00000577636 FAM83AQ86UY5 434 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 ZDHHC15Q96MV8 337 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 HTATIP2Q9BUP3 242 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 OSBPL3Q9H4L5 887 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 MYPNQ86TC9 1320 aa12.31□□□□□ -0.44
SS18-207ENST00000577636 RBBP6Q7Z6E9 1792 aaKnown RBP12.3□□□□□ -0.44
SS18-207ENST00000577636 OTOFQ9HC10 1997 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 IFIT2P09913 472 aaKnown RBP12.3□□□□□ -0.44
SS18-207ENST00000577636 PDE1AP54750 535 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 UBXN2AP68543 259 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 RABL6Q3YEC7 729 aaPredicted RBP12.3□□□□□ -0.44
SS18-207ENST00000577636 ANKRD23Q86SG2 305 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 KLHDC4Q8TBB5 520 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 KAZALD1Q96I82 304 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 ZSWIM8A7E2V4 1837 aa12.3□□□□□ -0.44
SS18-207ENST00000577636 ERC2O15083 957 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 PDE8BO95263 885 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 GJB1P08034 283 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 IFIT1P09914 478 aaKnown RBP12.29□□□□□ -0.44
SS18-207ENST00000577636 CYP2C8P10632 490 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 GJA8P48165 433 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 PRKCZQ05513 592 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 MRIQ9BWK5 157 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 IL1RAPL2Q9NP60 686 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 STAP2Q9UGK3 403 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 TAOK2Q9UL54 1235 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 GABRQQ9UN88 632 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 NR2E3Q9Y5X4 410 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 MAST3O60307 1309 aa12.29□□□□□ -0.44
SS18-207ENST00000577636 DLL1O00548 723 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 TFRCP02786 760 aaKnown RBP12.28□□□□□ -0.44
SS18-207ENST00000577636 FCGRTP55899 365 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 FKBP1CQ5VVH2 108 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 HHIPL2Q6UWX4 724 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 FAM151AQ8WW52 585 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 IPO9Q96P70 1041 aaKnown RBP12.28□□□□□ -0.44
SS18-207ENST00000577636 UNC93B1Q9H1C4 597 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 COPRSQ9NQ92 184 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 TTC41PQ6P2S7 1318 aa12.28□□□□□ -0.44
SS18-207ENST00000577636 TRIM6-TRIM34B2RNG4 842 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 FARP2O94887 1054 aaPredicted RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 MFAP1P55081 439 aaKnown RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 GADL1Q6ZQY3 521 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 ERICH6Q7L0X2 663 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 OTUD7AQ8TE49 926 aaPredicted RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 U2AF1L4Q8WU68 220 aaKnown RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 PARK7Q99497 189 aaKnown RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 SIL1Q9H173 461 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 USP40Q9NVE5 1235 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 PA2G4Q9UQ80 394 aaKnown RBP12.27□□□□□ -0.45
SS18-207ENST00000577636 LAMB1P07942 1786 aa12.27□□□□□ -0.45
SS18-207ENST00000577636 A0A1B0GUL6 1792 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 ADCY3O60266 1144 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 EVI5O60447 810 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 GSPT1P15170 499 aaKnown RBP12.26□□□□□ -0.45
SS18-207ENST00000577636 SDSP20132 328 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 NFIAQ12857 509 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 DIXDC1Q155Q3 683 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 AACSQ86V21 672 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 KCNH4Q9UQ05 1017 aa12.26□□□□□ -0.45
SS18-207ENST00000577636 SUGT1Q9Y2Z0 365 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms