RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 DIEXFQ68CQ4 756 aaKnown RBP16.9■□□□□ 0.3
CCDC40-216ENST00000576241 FAM198AQ9UFP1 575 aa16.9■□□□□ 0.3
CCDC40-216ENST00000576241 GAKO14976 1311 aa16.9■□□□□ 0.3
CCDC40-216ENST00000576241 PNMA6EA0A0J9YXQ4 647 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 INPP5BP32019 993 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 PPATQ06203 517 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 FTSJ3Q8IY81 847 aaKnown RBP16.89■□□□□ 0.29
CCDC40-216ENST00000576241 FAM43AQ8N2R8 423 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 TMEM57Q8N5G2 664 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 ZCCHC17Q9NP64 241 aaKnown RBP16.89■□□□□ 0.29
CCDC40-216ENST00000576241 UNC80Q8N2C7 3258 aa16.89■□□□□ 0.29
CCDC40-216ENST00000576241 A0A1W2PPC1 479 aa16.88■□□□□ 0.29
CCDC40-216ENST00000576241 ENTPD3O75355 529 aa16.88■□□□□ 0.29
CCDC40-216ENST00000576241 ERICH6Q7L0X2 663 aa16.88■□□□□ 0.29
CCDC40-216ENST00000576241 ZSCAN29Q8IWY8 852 aaPredicted RBP16.88■□□□□ 0.29
CCDC40-216ENST00000576241 IDI2Q9BXS1 227 aa16.88■□□□□ 0.29
CCDC40-216ENST00000576241 ZNF112Q9UJU3 913 aa16.88■□□□□ 0.29
CCDC40-216ENST00000576241 ZSWIM8A7E2V4 1837 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 BTBD19C9JJ37 291 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 ZBTB7BO15156 539 aaPredicted RBP16.87■□□□□ 0.29
CCDC40-216ENST00000576241 BTDP43251 543 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 RGS3P49796 1198 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 SPATA5Q8NB90 893 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 FAM163AQ96GL9 167 aaPredicted RBP16.87■□□□□ 0.29
CCDC40-216ENST00000576241 HTATIP2Q9BUP3 242 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 NR2E3Q9Y5X4 410 aa16.87■□□□□ 0.29
CCDC40-216ENST00000576241 GSTO1P78417 241 aa16.86■□□□□ 0.29
CCDC40-216ENST00000576241 MECOMQ03112 1051 aa16.86■□□□□ 0.29
CCDC40-216ENST00000576241 OS9Q13438 667 aaPredicted RBP16.86■□□□□ 0.29
CCDC40-216ENST00000576241 MTFR1Q15390 333 aa16.86■□□□□ 0.29
CCDC40-216ENST00000576241 NOL9Q5SY16 702 aaKnown RBP16.86■□□□□ 0.29
CCDC40-216ENST00000576241 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.86■□□□□ 0.29
CCDC40-216ENST00000576241 HMG20BQ9P0W2 317 aa16.86■□□□□ 0.29
CCDC40-216ENST00000576241 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.86■□□□□ 0.29
CCDC40-216ENST00000576241 MROH7-TTC4A0A0A0MT08 1334 aa16.86■□□□□ 0.29
CCDC40-216ENST00000576241 TLR2O60603 784 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 UQCRFS1P1P0C7P4 283 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 ARID4AP29374 1257 aaPredicted RBP16.85■□□□□ 0.29
CCDC40-216ENST00000576241 PICALMQ13492 652 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 KIF22Q14807 665 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 UBE2Q1Q7Z7E8 422 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 ITPRIPQ8IWB1 547 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 ZFPM1Q8IX07 1006 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 ARHGAP39Q9C0H5 1083 aa16.85■□□□□ 0.29
CCDC40-216ENST00000576241 LDHCP07864 332 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 PI16Q6UXB8 463 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 PICK1Q9NRD5 415 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 RAI14Q9P0K7 980 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 KCNH4Q9UQ05 1017 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 STXBP5LQ9Y2K9 1186 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 RFX7Q2KHR2 1363 aa16.84■□□□□ 0.29
CCDC40-216ENST00000576241 GPR75-ASB3A0A0A6YYF3 556 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 POLA2Q14181 598 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 ATRNL1Q5VV63 1379 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 Q7L0L9 218 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 ANKRD23Q86SG2 305 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 DEFB123Q8N688 67 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 SSH3Q8TE77 659 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 GPR108Q9NPR9 543 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 LRP2BPQ9P2M1 347 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 STAP2Q9UGK3 403 aa16.83■□□□□ 0.28
CCDC40-216ENST00000576241 ZBED9Q6R2W3 1325 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 PDHXO00330 501 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 SURF6O75683 361 aaKnown RBP16.82■□□□□ 0.28
CCDC40-216ENST00000576241 MAP4K4O95819 1239 aaPredicted RBP16.82■□□□□ 0.28
CCDC40-216ENST00000576241 ATP8B2P98198 1209 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 TNNI3KQ59H18 835 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 CCDC158Q5M9N0 1113 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 TTC39AQ5SRH9 613 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 TBC1D9Q6ZT07 1266 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 SH3BP5LQ7L8J4 393 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 SCYL3Q8IZE3 742 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 NKX2-3Q8TAU0 364 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 NSUN4Q96CB9 384 aaKnown RBP16.82■□□□□ 0.28
CCDC40-216ENST00000576241 C1orf115Q9H7X2 142 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 DDX4Q9NQI0 724 aaKnown RBP16.82■□□□□ 0.28
CCDC40-216ENST00000576241 FPGT-TNNI3KV9GXZ4 949 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 MYH2Q9UKX2 1941 aa16.82■□□□□ 0.28
CCDC40-216ENST00000576241 AK9Q5TCS8 1911 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 DDTLA6NHG4 134 aaPredicted RBP16.81■□□□□ 0.28
CCDC40-216ENST00000576241 PHF20L1A8MW92 1017 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 CXCL11O14625 94 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 MCAMP43121 646 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 GJA8P48165 433 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 RHBDL3P58872 404 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 LACTBP83111 547 aaPredicted RBP16.81■□□□□ 0.28
CCDC40-216ENST00000576241 ZNF384Q8TF68 577 aa16.81■□□□□ 0.28
CCDC40-216ENST00000576241 NOL10Q9BSC4 688 aaKnown RBP16.81■□□□□ 0.28
CCDC40-216ENST00000576241 NPM3O75607 178 aaKnown RBP16.8■□□□□ 0.28
CCDC40-216ENST00000576241 GNRH1P01148 92 aa16.8■□□□□ 0.28
CCDC40-216ENST00000576241 ZHX2Q9Y6X8 837 aa16.8■□□□□ 0.28
CCDC40-216ENST00000576241 CTNND1O60716 968 aaKnown RBP16.79■□□□□ 0.28
CCDC40-216ENST00000576241 ECM2O94769 699 aaPredicted RBP16.79■□□□□ 0.28
CCDC40-216ENST00000576241 RLBP1P12271 317 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 PTPRAP18433 802 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 MAP3K10Q02779 954 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 GPR153Q6NV75 609 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 FASTKD5Q7L8L6 764 aaKnown RBP16.79■□□□□ 0.28
CCDC40-216ENST00000576241 PARK7Q99497 189 aaKnown RBP16.79■□□□□ 0.28
CCDC40-216ENST00000576241 DBNDD2Q9BQY9 259 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms