RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF296Q8WUU4 475 aaPredicted RBP18.36■□□□□ 0.53
VPS39-210ENST00000568357 RPAP1Q9BWH6 1393 aaPredicted RBP18.36■□□□□ 0.53
VPS39-210ENST00000568357 DCTPP1Q9H773 170 aa18.36■□□□□ 0.53
VPS39-210ENST00000568357 RFX7Q2KHR2 1363 aa18.35■□□□□ 0.53
VPS39-210ENST00000568357 CNKSR2Q8WXI2 1034 aa18.35■□□□□ 0.53
VPS39-210ENST00000568357 HOOK2Q96ED9 719 aa18.35■□□□□ 0.53
VPS39-210ENST00000568357 LRRCC1Q9C099 1032 aa18.35■□□□□ 0.53
VPS39-210ENST00000568357 DDTLA6NHG4 134 aaPredicted RBP18.34■□□□□ 0.53
VPS39-210ENST00000568357 ZBTB48P10074 688 aaPredicted RBP18.34■□□□□ 0.53
VPS39-210ENST00000568357 PICALMQ13492 652 aa18.34■□□□□ 0.53
VPS39-210ENST00000568357 PKN2Q16513 984 aaKnown RBP18.34■□□□□ 0.53
VPS39-210ENST00000568357 DCAF15Q66K64 600 aa18.34■□□□□ 0.53
VPS39-210ENST00000568357 ZKSCAN4Q969J2 545 aaPredicted RBP18.34■□□□□ 0.53
VPS39-210ENST00000568357 OPTNQ96CV9 577 aa18.34■□□□□ 0.53
VPS39-210ENST00000568357 WRNIP1Q96S55 665 aa18.34■□□□□ 0.53
VPS39-210ENST00000568357 IDH1O75874 414 aaKnown RBP18.33■□□□□ 0.52
VPS39-210ENST00000568357 TBC1D8O95759 1140 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 MAP4K4O95819 1239 aaPredicted RBP18.33■□□□□ 0.52
VPS39-210ENST00000568357 SLURP2P0DP57 97 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 PPP4CP60510 307 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 SH3RF3Q8TEJ3 882 aaPredicted RBP18.33■□□□□ 0.52
VPS39-210ENST00000568357 ZNF341Q9BYN7 854 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 AATFQ9NY61 560 aaKnown RBP eCLIP18.33■□□□□ 0.52
VPS39-210ENST00000568357 ZNF112Q9UJU3 913 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 CSADQ9Y600 493 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 SNCAIPQ9Y6H5 919 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 MYH2Q9UKX2 1941 aa18.33■□□□□ 0.52
VPS39-210ENST00000568357 MANSC4A6NHS7 340 aaPredicted RBP18.32■□□□□ 0.52
VPS39-210ENST00000568357 IGSF3O75054 1194 aa18.32■□□□□ 0.52
VPS39-210ENST00000568357 NPM3O75607 178 aaKnown RBP18.32■□□□□ 0.52
VPS39-210ENST00000568357 CYP7A1P22680 504 aa18.32■□□□□ 0.52
VPS39-210ENST00000568357 INPP5BP32019 993 aa18.32■□□□□ 0.52
VPS39-210ENST00000568357 SREBF2Q12772 1141 aa18.32■□□□□ 0.52
VPS39-210ENST00000568357 ZSCAN29Q8IWY8 852 aaPredicted RBP18.32■□□□□ 0.52
VPS39-210ENST00000568357 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.32■□□□□ 0.52
VPS39-210ENST00000568357 RBBP6Q7Z6E9 1792 aaKnown RBP18.32■□□□□ 0.52
VPS39-210ENST00000568357 ATRNL1Q5VV63 1379 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 BAG3O95817 575 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 INHBEP58166 350 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 MAP3K10Q02779 954 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 TEX11Q8IYF3 940 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 MAGEB6Q8N7X4 407 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 MS4A4AQ96JQ5 239 aa18.31■□□□□ 0.52
VPS39-210ENST00000568357 PHF20L1A8MW92 1017 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 ATP5JP18859 108 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 DYNLL1P63167 89 aaKnown RBP18.3■□□□□ 0.52
VPS39-210ENST00000568357 MAP3K12Q12852 859 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 FBXO46Q6PJ61 603 aaPredicted RBP18.3■□□□□ 0.52
VPS39-210ENST00000568357 IFNL1Q8IU54 200 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 EDC3Q96F86 508 aaKnown RBP18.3■□□□□ 0.52
VPS39-210ENST00000568357 DNAJC2Q99543 621 aaKnown RBP18.3■□□□□ 0.52
VPS39-210ENST00000568357 PTPN18Q99952 460 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 NOL10Q9BSC4 688 aaKnown RBP18.3■□□□□ 0.52
VPS39-210ENST00000568357 BOLA2Q9H3K6 86 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 R3HDMLQ9H3Y0 253 aa18.3■□□□□ 0.52
VPS39-210ENST00000568357 TESPA1A2RU30 521 aaPredicted RBP18.29■□□□□ 0.52
VPS39-210ENST00000568357 SPDYE5A6NIY4 337 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 IGF2BP3O00425 579 aaKnown RBP eCLIP18.29■□□□□ 0.52
VPS39-210ENST00000568357 GOLIM4O00461 696 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 FXR1P51114 621 aaKnown RBP eCLIP18.29■□□□□ 0.52
VPS39-210ENST00000568357 ERO1BQ86YB8 467 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 MIGA1Q8NAN2 632 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 TGFBRAP1Q8WUH2 860 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 OTUD5Q96G74 571 aa18.29■□□□□ 0.52
VPS39-210ENST00000568357 OSBPL5Q9H0X9 879 aaPredicted RBP18.29■□□□□ 0.52
VPS39-210ENST00000568357 MKI67P46013 3256 aaKnown RBP18.29■□□□□ 0.52
VPS39-210ENST00000568357 PLCG2P16885 1265 aa18.28■□□□□ 0.52
VPS39-210ENST00000568357 TTF1Q15361 905 aaPredicted RBP18.28■□□□□ 0.52
VPS39-210ENST00000568357 GPR25O00155 361 aa18.27■□□□□ 0.52
VPS39-210ENST00000568357 IRF6O14896 467 aa18.27■□□□□ 0.52
VPS39-210ENST00000568357 HAUS7Q99871 368 aa18.27■□□□□ 0.52
VPS39-210ENST00000568357 TBC1D12O60347 775 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 PDE6AP16499 860 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 GTF2A2P52657 109 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 NOL9Q5SY16 702 aaKnown RBP18.26■□□□□ 0.51
VPS39-210ENST00000568357 SLC9C2Q5TAH2 1124 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 MAPKAPK5Q8IW41 473 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 BRI3BPQ8WY22 251 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 PAG1Q9NWQ8 432 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 SUPT16HQ9Y5B9 1047 aaKnown RBP18.26■□□□□ 0.51
VPS39-210ENST00000568357 OTOFQ9HC10 1997 aa18.26■□□□□ 0.51
VPS39-210ENST00000568357 CCL15-CCL14A0A0B4J2E2 113 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 POTEFA5A3E0 1075 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 FAM196BA6NMK8 535 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 ALDH1A1P00352 501 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 PPATQ06203 517 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 PPIL2Q13356 520 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 CCL15Q16663 113 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 TMED8Q6PL24 325 aaPredicted RBP18.25■□□□□ 0.51
VPS39-210ENST00000568357 RIOK1Q9BRS2 568 aaKnown RBP18.25■□□□□ 0.51
VPS39-210ENST00000568357 CFHR5Q9BXR6 569 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 ECHDC1Q9NTX5 307 aa18.25■□□□□ 0.51
VPS39-210ENST00000568357 FLT1P17948 1338 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 HTTP42858 3142 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 TCRBV5S4A2TA0A5A2 114 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 SLFNL1Q499Z3 407 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 TSHZ3Q63HK5 1081 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 EXOC6Q8TAG9 804 aa18.24■□□□□ 0.51
VPS39-210ENST00000568357 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.24■□□□□ 0.51
VPS39-210ENST00000568357 PALD1Q9ULE6 856 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms